Variant report

Variant	rs6902875
Chromosome Location	chr6:132617072-132617073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10456995	0.80[EUR][1000 genomes]
rs11154668	0.87[CEU][hapmap]
rs1406936	0.87[CEU][hapmap]
rs1998073	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs1998074	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs2294432	0.84[CHB][hapmap]
rs6911439	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs6925688	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738705	0.91[CEU][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs7738716	0.87[CEU][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap]
rs7771572	0.87[CEU][hapmap];0.88[MEX][hapmap]
rs7772637	0.87[CEU][hapmap]
rs9321333	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs9321334	0.87[CEU][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs9402393	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs9402395	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886674	chr6:132613798-132694751	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6902875	BCLAF1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132611000-132625600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:132612600-132626400	Weak transcription	Fetal Stomach	stomach
3	chr6:132614400-132619000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:132615400-132617200	Weak transcription	Osteobl	bone
5	chr6:132615600-132618000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:132615800-132635400	Weak transcription	Fetal Lung	lung
7	chr6:132616200-132620400	Weak transcription	Esophagus	oesophagus
8	chr6:132616200-132625200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:132616400-132617200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:132616600-132625200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:132617000-132618400	Strong transcription	Fetal Kidney	kidney
12	chr6:132617000-132618800	Strong transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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