Variant report

Variant	rs9402395
Chromosome Location	chr6:132566119-132566120
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10456995	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10457585	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11154668	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12212796	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406936	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1998073	0.99[EUR][1000 genomes]
rs1998074	0.99[EUR][1000 genomes]
rs6902875	0.80[EUR][1000 genomes]
rs6911439	0.99[EUR][1000 genomes]
rs6925688	0.80[EUR][1000 genomes]
rs7738705	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7738716	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7752092	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7771572	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7772637	0.93[EUR][1000 genomes]
rs9321333	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321334	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402393	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132564200-132568200	Weak transcription	NHLF	lung
2	chr6:132565200-132567400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links