Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:56252272..56255163-chr6:56263455..56266276,3	MCF-7	breast:
2	chr6:56258236..56262021-chr6:56262029..56264794,4	MCF-7	breast:
3	chr6:56263704..56266113-chr6:56287391..56289066,2	MCF-7	breast:
4	chr6:56263868..56266502-chr6:56269861..56271738,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124749	Chromatin interaction

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10456187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10456733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10456734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10949000	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12202464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28855739	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55780935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62412409	1.00[AFR][1000 genomes]
rs62412458	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830666	chr6:56243743-56419599	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1022577	chr6:56263674-56289698	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56253000-56282600	Weak transcription	Aorta	Aorta
2	chr6:56259200-56264800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:56261800-56265600	Enhancers	Fetal Intestine Large	intestine
4	chr6:56263400-56264000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:56263400-56264200	Enhancers	Duodenum Mucosa	Duodenum
6	chr6:56263400-56265000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr6:56263400-56265200	Enhancers	Hela-S3	cervix
8	chr6:56263400-56265600	Enhancers	Fetal Intestine Small	intestine
9	chr6:56263600-56264000	Flanking Active TSS	A549	lung
10	chr6:56263600-56264200	Flanking Active TSS	Liver	Liver
11	chr6:56263600-56264400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:56263600-56264400	Enhancers	Small Intestine	intestine
13	chr6:56263600-56264400	Flanking Active TSS	HepG2	liver
14	chr6:56263600-56264600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr6:56263600-56265200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr6:56263800-56264200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:56263800-56264200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:56263800-56264200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr6:56263800-56264400	Enhancers	Fetal Kidney	kidney
20	chr6:56263800-56265200	Enhancers	Stomach Mucosa	stomach
21	chr6:56263800-56265400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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