Variant report

Variant	rs62412409
Chromosome Location	chr6:56223900-56223901
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56223388..56224639-chr6:56460054..56461055,4	K562	blood:
2	chr6:56223868..56224655-chr6:56435265..56436257,2	MCF-7	breast:
3	chr6:56223580..56224741-chr6:56457433..56458422,8	K562	blood:
4	chr6:56223761..56224766-chr6:56435256..56436214,5	K562	blood:
5	chr6:56223731..56224682-chr6:56457326..56458340,3	MCF-7	breast:
6	chr6:56223651..56224750-chr6:56459827..56460973,4	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10456187	1.00[AFR][1000 genomes]
rs10456733	1.00[AFR][1000 genomes]
rs10456734	1.00[AFR][1000 genomes]
rs12202464	1.00[AFR][1000 genomes]
rs12214233	1.00[AFR][1000 genomes]
rs55780935	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56218400-56229200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:56221000-56224200	Enhancers	HMEC	breast
3	chr6:56221000-56224200	Enhancers	NHEK	skin
4	chr6:56221200-56224600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:56221400-56224400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:56221400-56224600	Weak transcription	Brain Substantia Nigra	brain
7	chr6:56221400-56224800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:56221400-56231000	Weak transcription	Right Ventricle	heart
9	chr6:56221600-56224000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:56221600-56233200	Weak transcription	NHLF	lung
11	chr6:56221800-56224200	Weak transcription	HUVEC	blood vessel
12	chr6:56221800-56229800	Weak transcription	Fetal Stomach	stomach
13	chr6:56222400-56231000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:56222600-56229200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:56222600-56230800	Weak transcription	Fetal Heart	heart
16	chr6:56222600-56231000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:56222800-56224400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr6:56222800-56224400	Weak transcription	Hela-S3	cervix
19	chr6:56222800-56229200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:56223000-56229200	Weak transcription	NHDF-Ad	bronchial
21	chr6:56223200-56224200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:56223200-56228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:56223200-56228800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:56223200-56228800	Weak transcription	HSMMtube	muscle
25	chr6:56223200-56229000	Weak transcription	NH-A	brain
26	chr6:56223400-56228800	Weak transcription	Osteobl	bone
27	chr6:56223400-56229000	Weak transcription	HSMM	muscle
28	chr6:56223400-56229200	Weak transcription	Colon Smooth Muscle	Colon
29	chr6:56223400-56231000	Weak transcription	Fetal Lung	lung

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