Variant report

Variant	rs12216477
Chromosome Location	chr6:91794605-91794606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:91793724..91795491-chr6:91797204..91799841,2	K562	blood:
2	chr6:91793633..91795491-chr6:91798341..91801324,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10455175	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10455526	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10806442	1.00[ASN][1000 genomes]
rs12193216	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196506	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204644	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208255	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208313	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17625872	1.00[ASN][1000 genomes]
rs1881829	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9451574	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9451576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830726	chr6:91750692-91921838	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1031681	chr6:91784557-92075312	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538359	chr6:91784557-92075312	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:91791600-91797600	Weak transcription	Fetal Kidney	kidney
2	chr6:91792200-91797000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:91792400-91797400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:91792400-91797400	Weak transcription	Fetal Stomach	stomach
5	chr6:91793200-91797400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:91793400-91796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:91793400-91796800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:91793400-91796800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:91793400-91797000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:91793400-91797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:91793400-91797400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:91793400-91797400	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:91793400-91797600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:91793400-91797600	Weak transcription	Adipose Nuclei	Adipose
15	chr6:91793600-91796200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:91793600-91796600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:91793600-91797000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:91793600-91797600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:91793800-91795800	Weak transcription	Ovary	ovary
20	chr6:91793800-91797400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr6:91794400-91794800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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