Variant report

Variant	rs9451574
Chromosome Location	chr6:91792244-91792245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:91791393..91793294-chr6:91796040..91797967,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10455175	1.00[EUR][1000 genomes]
rs10455526	1.00[EUR][1000 genomes]
rs12193216	0.95[EUR][1000 genomes]
rs12196506	1.00[EUR][1000 genomes]
rs12204644	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12208255	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12208313	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12216477	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1881829	1.00[EUR][1000 genomes]
rs9451576	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830726	chr6:91750692-91921838	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1031681	chr6:91784557-92075312	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538359	chr6:91784557-92075312	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:91789600-91792400	Enhancers	Fetal Stomach	stomach
2	chr6:91789800-91792400	Enhancers	Brain Germinal Matrix	brain
3	chr6:91789800-91793400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:91790800-91793200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:91791000-91792400	Enhancers	Fetal Brain Male	brain
6	chr6:91791000-91792600	Enhancers	Fetal Intestine Large	intestine
7	chr6:91791000-91793600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:91791200-91792800	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:91791200-91793400	Enhancers	Fetal Lung	lung
10	chr6:91791400-91792600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:91791400-91792600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:91791400-91793400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr6:91791400-91793400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:91791400-91793400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr6:91791400-91793400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:91791400-91793400	Enhancers	NH-A	brain
17	chr6:91791400-91793800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:91791400-91793800	Enhancers	Ovary	ovary
19	chr6:91791600-91792400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:91791600-91793400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:91791600-91793400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:91791600-91793600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:91791600-91793600	Enhancers	HSMM	muscle
24	chr6:91791600-91797600	Weak transcription	Fetal Kidney	kidney
25	chr6:91791800-91793200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:91792000-91792400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:91792000-91792400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:91792000-91792400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:91792000-91792600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:91792000-91792800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:91792000-91793400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:91792000-91793600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:91792000-91793600	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr6:91792200-91792400	Enhancers	Fetal Muscle Leg	muscle
35	chr6:91792200-91793400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:91792200-91793400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:91792200-91793400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:91792200-91793400	Enhancers	Adipose Nuclei	Adipose
39	chr6:91792200-91793600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:91792200-91793600	Enhancers	HSMMtube	muscle
41	chr6:91792200-91797000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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