Variant report

Variant	rs12217721
Chromosome Location	chr10:49958535-49958536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10857631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11101459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11101460	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17771583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2620902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7072606	0.89[GIH][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7082315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7082330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7101218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12217721	WDFY4	cis	Whole Blood	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49923400-49960200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49952000-49960800	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:49953400-49960200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:49956200-49958600	Enhancers	Adipose Nuclei	Adipose
5	chr10:49957000-49959000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr10:49957000-49961200	Strong transcription	Primary B cells from cord blood	blood
7	chr10:49957000-49962000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:49957200-49959000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr10:49957400-49958600	Enhancers	Lung	lung
10	chr10:49957400-49958600	Genic enhancers	Spleen	Spleen
11	chr10:49957400-49959000	Enhancers	Left Ventricle	heart
12	chr10:49957400-49960200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr10:49957600-49959600	Enhancers	Right Ventricle	heart
14	chr10:49957600-49960200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:49957600-49963400	Strong transcription	GM12878-XiMat	blood
16	chr10:49957800-49959000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:49958000-49960200	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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