Variant report

Variant	rs2620902
Chromosome Location	chr10:49970226-49970227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10857631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101460	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12217721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17771583	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7072606	0.83[GIH][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs7082315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7082330	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7101218	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895374	chr10:49969556-49990081	Strong transcription Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49962400-49980600	Strong transcription	Primary B cells from cord blood	blood
2	chr10:49967400-49971200	Strong transcription	Primary hematopoietic stem cells	blood
3	chr10:49967600-49977800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:49967600-50000000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:49967800-49978200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:49967800-49979000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr10:49968000-49971400	Strong transcription	Spleen	Spleen
9	chr10:49968000-49974200	Weak transcription	Lung	lung
10	chr10:49968000-49977200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr10:49968200-49972000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:49968400-49971800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:49968600-49978600	Weak transcription	Adipose Nuclei	Adipose
14	chr10:49969000-49971800	Strong transcription	GM12878-XiMat	blood
15	chr10:49969200-49973800	Enhancers	Brain Germinal Matrix	brain
16	chr10:49969400-49989800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:49970000-49970600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:49970200-49970600	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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