Variant report

Variant	rs7072606
Chromosome Location	chr10:49933974-49933975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10857631	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11101459	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11101460	0.84[ASW][hapmap];0.83[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12217721	0.89[GIH][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17771583	1.00[ASW][hapmap];0.89[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2620902	0.83[GIH][hapmap];0.89[MEX][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs7082315	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7082330	1.00[ASW][hapmap];0.86[GIH][hapmap];0.92[LWK][hapmap];0.87[TSI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7101218	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7072606	WDFY4	cis	Whole Blood	GTEx

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49923400-49960200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:49923600-49939400	Weak transcription	Adipose Nuclei	Adipose
3	chr10:49925200-49951600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr10:49926400-49953600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:49927800-49949600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:49927800-49953400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:49928000-49951600	Strong transcription	GM12878-XiMat	blood
8	chr10:49928400-49953800	Strong transcription	Primary hematopoietic stem cells	blood
9	chr10:49929400-49939200	Weak transcription	Lung	lung
10	chr10:49930800-49934600	Genic enhancers	Primary B cells from cord blood	blood
11	chr10:49931000-49952800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:49931000-49956800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:49931600-49934200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr10:49932000-49934200	Enhancers	Fetal Muscle Leg	muscle
15	chr10:49932400-49934400	Genic enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:49932600-49935000	Weak transcription	Spleen	Spleen
17	chr10:49933200-49934200	Genic enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:49933800-49934200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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