Variant report

Variant	rs12222602
Chromosome Location	chr11:33864360-33864361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10768030	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12421529	0.83[EUR][1000 genomes]
rs55845089	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55933775	0.83[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12222602	CD59	Cis_1M	lymphoblastoid	RTeQTL
rs12222602	CD59	cis	Artery Tibial	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33863800-33864400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:33863800-33864400	Flanking Active TSS	Brain Cingulate Gyrus	brain
3	chr11:33863800-33864600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:33863800-33864600	Active TSS	Brain Anterior Caudate	brain
5	chr11:33864000-33864400	Bivalent Enhancer	Adipose Nuclei	Adipose
6	chr11:33864000-33864400	Enhancers	Brain Germinal Matrix	brain
7	chr11:33864000-33864400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
8	chr11:33864000-33864400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:33864000-33864400	Enhancers	Brain Substantia Nigra	brain
10	chr11:33864200-33864400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:33864200-33864400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr11:33864200-33864400	Bivalent Enhancer	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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