Variant report

Variant	rs55845089
Chromosome Location	chr11:33864604-33864605
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10768030	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11032377	0.80[EUR][1000 genomes]
rs11032385	0.80[EUR][1000 genomes]
rs11601836	0.80[EUR][1000 genomes]
rs11607434	0.81[EUR][1000 genomes]
rs11608235	0.82[EUR][1000 genomes]
rs12222602	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12419271	0.80[EUR][1000 genomes]
rs12421529	0.87[EUR][1000 genomes]
rs55933775	0.86[EUR][1000 genomes]
rs60691031	0.82[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs55845089	CD59	cis	Artery Tibial	GTEx
rs55845089	CD59	cis	Esophagus Muscularis	GTEx
rs55845089	CD59	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33864400-33872400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:33864400-33874000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:33864400-33874200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:33864600-33864800	Flanking Active TSS	Brain Anterior Caudate	brain
5	chr11:33864600-33864800	Active TSS	Brain Substantia Nigra	brain
6	chr11:33864600-33866600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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