Variant report

Variant	rs11032377
Chromosome Location	chr11:33799413-33799414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33795039..33797877-chr11:33799009..33801476,4	K562	blood:
2	chr11:33756399..33761777-chr11:33794455..33799644,9	K562	blood:
3	chr11:33765991..33768760-chr11:33799223..33801233,2	K562	blood:
4	chr11:33783005..33784901-chr11:33798617..33800423,2	K562	blood:

Variant related genes	Relation type
ENSG00000110429	Chromatin interaction
ENSG00000255272	Chromatin interaction
ENSG00000085063	Chromatin interaction
ENSG00000254508	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10768030	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11032385	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599935	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11601836	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11607434	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607549	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11608235	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419271	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421529	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1522086	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17760694	0.90[CEU][hapmap];0.83[GIH][hapmap];0.80[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17767323	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3181268	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55845089	0.80[EUR][1000 genomes]
rs55933775	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56026019	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60691031	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61887477	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7930105	0.95[CEU][hapmap];0.80[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7941387	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7943459	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11032377	CD59	cis	Esophagus Muscularis	GTEx
rs11032377	CD59	cis	Artery Tibial	GTEx
rs11032377	CD59	cis	cerebellum	SCAN

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33796800-33799800	Weak transcription	Right Atrium	heart
2	chr11:33796800-33799800	Weak transcription	Right Ventricle	heart
3	chr11:33797000-33799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:33797000-33799800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:33797000-33799800	Weak transcription	Fetal Brain Female	brain
6	chr11:33797200-33799800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:33797200-33799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:33797200-33799800	Weak transcription	Left Ventricle	heart
9	chr11:33797200-33800000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:33797200-33800800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:33797200-33801600	Weak transcription	Aorta	Aorta
12	chr11:33797200-33801600	Weak transcription	Ovary	ovary
13	chr11:33797400-33799600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:33797400-33800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:33797600-33799600	Weak transcription	HSMMtube	muscle
16	chr11:33797600-33799600	Weak transcription	NH-A	brain
17	chr11:33797600-33799800	Weak transcription	HSMM	muscle
18	chr11:33797600-33799800	Weak transcription	NHDF-Ad	bronchial
19	chr11:33797600-33801400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:33797600-33801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:33797800-33799600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:33797800-33800000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:33798000-33799600	Weak transcription	NHLF	lung
24	chr11:33798000-33800600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr11:33798200-33800200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:33798200-33800400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:33798400-33802000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:33798600-33800400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:33799200-33800200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:33799200-33800400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:33799200-33800800	Enhancers	H1 Cell Line	embryonic stem cell
32	chr11:33799400-33799600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
33	chr11:33799400-33799600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
34	chr11:33799400-33799600	Bivalent Enhancer	Fetal Kidney	kidney
35	chr11:33799400-33799600	Enhancers	GM12878-XiMat	blood
36	chr11:33799400-33799800	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr11:33799400-33799800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
38	chr11:33799400-33799800	Enhancers	Brain Germinal Matrix	brain
39	chr11:33799400-33800000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr11:33799400-33800400	Bivalent Enhancer	Fetal Thymus	thymus
41	chr11:33799400-33800600	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr11:33799400-33801800	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr11:33799400-33802000	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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