Variant report

Variant	rs11607434
Chromosome Location	chr11:33798919-33798920
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33756399..33761777-chr11:33794455..33799644,9	K562	blood:
2	chr11:33783005..33784901-chr11:33798617..33800423,2	K562	blood:

Variant related genes	Relation type
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10768030	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11032377	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032385	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599935	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11601836	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11607549	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11608235	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12419271	0.92[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421529	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1522086	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17760694	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17767323	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3181268	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55845089	0.81[EUR][1000 genomes]
rs55933775	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56026019	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60691031	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61887477	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7930105	0.83[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7941387	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7943459	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11607434	CD59	cis	Esophagus Muscularis	GTEx
rs11607434	CD59	Cis_1M	lymphoblastoid	RTeQTL
rs11607434	CD59	cis	Artery Tibial	GTEx

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33796800-33799800	Weak transcription	Right Atrium	heart
2	chr11:33796800-33799800	Weak transcription	Right Ventricle	heart
3	chr11:33797000-33799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:33797000-33799800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:33797000-33799800	Weak transcription	Fetal Brain Female	brain
6	chr11:33797200-33799400	Weak transcription	Brain Germinal Matrix	brain
7	chr11:33797200-33799800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:33797200-33799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:33797200-33799800	Weak transcription	Left Ventricle	heart
10	chr11:33797200-33800000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:33797200-33800800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:33797200-33801600	Weak transcription	Aorta	Aorta
13	chr11:33797200-33801600	Weak transcription	Ovary	ovary
14	chr11:33797400-33799600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:33797400-33800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:33797600-33799600	Weak transcription	HSMMtube	muscle
17	chr11:33797600-33799600	Weak transcription	NH-A	brain
18	chr11:33797600-33799800	Weak transcription	HSMM	muscle
19	chr11:33797600-33799800	Weak transcription	NHDF-Ad	bronchial
20	chr11:33797600-33801400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:33797600-33801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:33797800-33799600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:33797800-33800000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:33798000-33799600	Weak transcription	NHLF	lung
25	chr11:33798000-33800600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr11:33798200-33800200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:33798200-33800400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:33798400-33802000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:33798600-33800400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr11:33798800-33799200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr11:33798800-33799200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:33798800-33799200	Weak transcription	GM12878-XiMat	blood

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