Variant report

Variant	rs12223202
Chromosome Location	chr11:32679973-32679974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11031921	0.89[CHB][hapmap]
rs11031930	0.89[CHB][hapmap]
rs7116407	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32679200-32680200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:32679600-32680000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:32679600-32680200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:32679600-32681600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:32679600-32681600	Enhancers	HMEC	breast
6	chr11:32679600-32681600	Enhancers	NHEK	skin
7	chr11:32679800-32680200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:32679800-32681000	Enhancers	NH-A	brain
9	chr11:32679800-32681600	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links