Variant report

Variant	rs11031930
Chromosome Location	chr11:32691569-32691570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10458903	0.93[JPT][hapmap]
rs11031921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11031984	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11032007	0.86[AMR][1000 genomes]
rs11032049	0.86[AMR][1000 genomes]
rs12223202	0.89[CHB][hapmap]
rs12225523	0.86[AMR][1000 genomes]
rs7116407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72895301	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72897126	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72897185	0.86[AMR][1000 genomes]
rs72910946	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72910965	0.84[EUR][1000 genomes]
rs72910967	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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