Variant report

Variant	rs12229097
Chromosome Location	chr12:120872124-120872125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10849749	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11065120	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34285891	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57943218	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7132474	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73221357	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7970933	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs12229097	COQ5	cis	Muscle Skeletal	GTEx
rs12229097	COQ5	cis	Skin Sun Exposed Lower leg	GTEx
rs12229097	COQ5	cis	Esophagus Muscularis	GTEx
rs12229097	COQ5	cis	lung	GTEx
rs12229097	COQ5	cis	Artery Tibial	GTEx
rs12229097	COQ5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120852400-120875200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:120867200-120875200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:120867600-120875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:120869200-120875200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr12:120871000-120875200	Weak transcription	Hela-S3	cervix
7	chr12:120871200-120873600	Weak transcription	HepG2	liver
8	chr12:120871200-120875200	Weak transcription	K562	blood
9	chr12:120872000-120872400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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