Variant report

Variant	rs7970933
Chromosome Location	chr12:120862474-120862475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10849749	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11065120	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12229097	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34285891	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57943218	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7132474	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73221357	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7970933	COQ5	Cis_1M	lymphoblastoid	RTeQTL
rs7970933	COQ5	cis	Artery Tibial	GTEx
rs7970933	COQ5	cis	Skin Sun Exposed Lower leg	GTEx
rs7970933	COQ5	cis	Muscle Skeletal	GTEx
rs7970933	COQ5	cis	lung	GTEx
rs7970933	COQ5	cis	Esophagus Muscularis	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120852400-120875200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:120856400-120866400	Weak transcription	Fetal Intestine Small	intestine
4	chr12:120860000-120863200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:120860000-120863400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:120862400-120862600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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