Variant report

Variant	rs7132474
Chromosome Location	chr12:120866996-120866997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1048830	0.85[ASN][1000 genomes]
rs1050187	0.81[ASN][1000 genomes]
rs10774549	0.83[ASN][1000 genomes]
rs10849749	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10849753	0.81[ASN][1000 genomes]
rs11065120	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11065132	0.81[ASN][1000 genomes]
rs12229097	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2235217	0.85[ASN][1000 genomes]
rs2235218	0.85[ASN][1000 genomes]
rs2393590	0.81[ASN][1000 genomes]
rs34285891	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3893104	0.81[ASN][1000 genomes]
rs4767902	0.81[ASN][1000 genomes]
rs57943218	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7308053	0.83[ASN][1000 genomes]
rs73221357	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7970933	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7132474	COQ5	cis	lung	GTEx
rs7132474	COQ5	cis	Artery Tibial	GTEx
rs7132474	COQ5	Cis_1M	lymphoblastoid	RTeQTL
rs7132474	COQ5	cis	Muscle Skeletal	GTEx
rs7132474	COQ5	cis	Esophagus Muscularis	GTEx
rs7132474	COQ5	cis	Adipose Subcutaneous	GTEx
rs7132474	COQ5	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120827200-120875200	Weak transcription	Right Atrium	heart
2	chr12:120852400-120875200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:120866400-120867600	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr12:120866400-120868400	Enhancers	Fetal Intestine Large	intestine
5	chr12:120866400-120868400	Enhancers	Fetal Intestine Small	intestine
6	chr12:120866600-120867000	Enhancers	A549	lung
7	chr12:120866600-120867600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:120866600-120867600	Enhancers	Duodenum Mucosa	Duodenum
9	chr12:120866600-120868000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:120866800-120867200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr12:120866800-120867400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr12:120866800-120867600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:120866800-120867600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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