Variant report

Variant	rs12240856
Chromosome Location	chr10:44289424-44289425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:44289198-44289538	HepG2	liver:	n/a	chr10:44289396-44289407
2	FOS	chr10:44289237-44289506	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr10:44289141-44289464	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr10:44289156-44289521	U87	brain:	n/a	n/a
5	MAX	chr10:44289166-44290102	NB4	blood:	n/a	n/a
6	FOS	chr10:44289211-44289561	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr10:44289189-44289550	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr10:44289206-44290042	NB4	blood:	n/a	n/a
9	CEBPB	chr10:44289213-44289554	A549	lung:	n/a	chr10:44289396-44289407
10	STAT3	chr10:44289229-44289560	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr10:44289214-44289514	MCF10A-Er-Src	breast:	n/a	n/a
12	POLR2A	chr10:44289186-44289521	U87	brain:	n/a	n/a
13	FOS	chr10:44289255-44289487	MCF10A-Er-Src	breast:	n/a	n/a
14	E2F4	chr10:44289190-44289592	MCF10A-Er-Src	breast:	n/a	n/a
15	CEBPB	chr10:44289133-44289599	IMR90	lung:	n/a	chr10:44289396-44289407
16	MYC	chr10:44289147-44289462	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:44289380-44289430	NT2-D1	testis:	n/a
2	chr10:44289380-44289430	RPTEC	kidney:	n/a
3	chr10:44289380-44289430	HRE	kidney:	n/a
4	chr10:44289380-44289430	HRPEpiC	eye:	n/a
5	chr10:44289380-44289430	HNPCEpiC	eye:	n/a
6	chr10:44289380-44289430	ECC-1	luminal epithelium:	n/a
7	chr10:44289380-44289430	HCT-116	colon:	n/a
8	chr10:44289380-44289430	AoSMC	blood vessel:	n/a
9	chr10:44289380-44289430	SKMC	muscle:	n/a
10	chr10:44289380-44289430	GM12892	blood:	n/a
11	chr10:44289380-44289430	SAEC	small airway:	n/a
12	chr10:44289380-44289430	T-47D	breast:	n/a
13	chr10:44289380-44289430	BJ	skin:	n/a
14	chr10:44289380-44289430	SK-N-SH_RA	brain:	n/a
15	chr10:44289380-44289430	HEK293	kidney:	embryo
16	chr10:44289380-44289430	PANC-1	pancreas:	n/a
17	chr10:44289380-44289430	AG09319	gingival:	n/a
18	chr10:44289380-44289430	HMEC	breast:	n/a
19	chr10:44289380-44289430	LNCaP	prostate:	n/a
20	chr10:44289380-44289430	PrEC	prostate:	n/a
21	chr10:44289380-44289430	Hela-S3	cervix:	n/a
22	chr10:44289380-44289430	MCF10A-Er-Src	breast:	n/a
23	chr10:44289380-44289430	HEEpiC	esophagus:	n/a
24	chr10:44289380-44289430	Jurkat	blood:	n/a
25	chr10:44289380-44289430	GM12878	blood:	n/a
26	chr10:44289380-44289430	HCM	heart:	n/a
27	chr10:44289380-44289430	IMR90	lung:	fetal
28	chr10:44289380-44289430	Hepatocyte	liver:	n/a
29	chr10:44289380-44289430	HIPEpiC	eye:	n/a
30	chr10:44289380-44289430	ProgFib	skin:	n/a
31	chr10:44289380-44289430	H1-hESC	embryonic stem cell:	embryo
32	chr10:44289380-44289430	GM19239	blood:	n/a
33	chr10:44289380-44289430	MCF-7	breast:	n/a
34	chr10:44289380-44289430	HRCEpiC	kidney:	n/a
35	chr10:44289380-44289430	HCPEpiC	choroid plexus:	n/a
36	chr10:44289380-44289430	AG09309	skin:	n/a
37	chr10:44289380-44289430	HCF	heart:	n/a
38	chr10:44289380-44289430	HPAEpiC	pulmonary alveolar:	n/a
39	chr10:44289380-44289430	HAEpiC	amniotic membrane:	n/a
40	chr10:44289380-44289430	GM06990	blood:	n/a
41	chr10:44289380-44289430	SK-N-MC	brain:	n/a
42	chr10:44289380-44289430	HL-60	blood:	n/a
43	chr10:44289380-44289430	HepG2	liver:	n/a
44	chr10:44289380-44289430	AG04449	skin:	fetal
45	chr10:44289380-44289430	NHBE	bronchial:	n/a
46	chr10:44289380-44289430	HUVEC	blood vessel:	n/a
47	chr10:44289380-44289430	BE2_C	brain:	n/a
48	chr10:44289380-44289430	PFSK-1	brain:	n/a
49	chr10:44289380-44289430	AG04450	lung:	fetal
50	chr10:44289380-44289430	Caco-2	colon:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44280117..44282923-chr10:44287063..44289824,2	K562	blood:

No data

Variant related genes	Relation type
HNRNPA3P1	TF binding region
HNRNPA3P1	CpG island

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11238631	1.00[AMR][1000 genomes]
rs11238684	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11238690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11238693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11238694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11238696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11238697	1.00[AMR][1000 genomes]
rs11238698	1.00[AMR][1000 genomes]
rs11238708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11238714	1.00[AMR][1000 genomes]
rs11238758	1.00[AMR][1000 genomes]
rs12245425	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248010	1.00[AMR][1000 genomes]
rs12248517	1.00[AMR][1000 genomes]
rs12250137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259992	1.00[AMR][1000 genomes]
rs12262961	1.00[AMR][1000 genomes]
rs12263087	1.00[AMR][1000 genomes]
rs12264312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267491	1.00[YRI][hapmap]
rs12267634	1.00[AMR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44277800-44295000	Weak transcription	Spleen	Spleen
2	chr10:44281600-44289600	Weak transcription	Right Atrium	heart
3	chr10:44286000-44302600	Weak transcription	Aorta	Aorta
4	chr10:44286800-44292400	Weak transcription	Ovary	ovary
5	chr10:44287000-44289600	Weak transcription	Osteobl	bone
6	chr10:44287600-44290000	Enhancers	Fetal Lung	lung
7	chr10:44288600-44290200	Enhancers	Fetal Muscle Leg	muscle
8	chr10:44289000-44289800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:44289000-44290000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:44289000-44290000	Enhancers	NHDF-Ad	bronchial
11	chr10:44289000-44290200	Enhancers	Adipose Nuclei	Adipose
12	chr10:44289000-44290800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:44289000-44290800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:44289200-44289600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr10:44289200-44289600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr10:44289200-44289800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr10:44289200-44289800	Enhancers	NHLF	lung
18	chr10:44289200-44290000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:44289400-44290000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:44289400-44290000	Enhancers	Fetal Stomach	stomach

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