Variant report

Variant	rs12248010
Chromosome Location	chr10:44299516-44299517
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11238631	1.00[AMR][1000 genomes]
rs11238684	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11238690	1.00[AMR][1000 genomes]
rs11238693	1.00[AMR][1000 genomes]
rs11238694	1.00[AMR][1000 genomes]
rs11238696	1.00[AMR][1000 genomes]
rs11238697	1.00[AMR][1000 genomes]
rs11238698	1.00[AMR][1000 genomes]
rs11238708	1.00[AMR][1000 genomes]
rs11238714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11238758	1.00[AMR][1000 genomes]
rs12240856	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12245425	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12248517	1.00[AMR][1000 genomes]
rs12250137	1.00[AMR][1000 genomes]
rs12259992	1.00[AMR][1000 genomes]
rs12262961	1.00[AMR][1000 genomes]
rs12263087	1.00[AMR][1000 genomes]
rs12264312	1.00[AMR][1000 genomes]
rs12265700	1.00[AMR][1000 genomes]
rs12267491	1.00[YRI][hapmap]
rs12267634	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049266	chr10:44296893-44323365	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44286000-44302600	Weak transcription	Aorta	Aorta
2	chr10:44290000-44300600	Weak transcription	Osteobl	bone
3	chr10:44290000-44303200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:44292600-44304800	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:44293400-44300800	Weak transcription	Right Atrium	heart
6	chr10:44293400-44304600	Weak transcription	Ovary	ovary
7	chr10:44295000-44300600	Weak transcription	NHDF-Ad	bronchial
8	chr10:44295000-44311000	Weak transcription	Left Ventricle	heart
9	chr10:44296000-44300000	Weak transcription	Fetal Lung	lung
10	chr10:44297000-44300400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:44297200-44302800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr10:44297600-44302800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr10:44298200-44300200	Weak transcription	Adipose Nuclei	Adipose
14	chr10:44299200-44299600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:44299200-44301400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr10:44299400-44299600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:44299400-44299600	Enhancers	Right Ventricle	heart
18	chr10:44299400-44300400	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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