Variant report

Variant	rs12241256
Chromosome Location	chr10:93699649-93699650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93691329..93694139-chr10:93698403..93701302,2	K562	blood:
2	chr10:93682499..93684924-chr10:93698185..93701330,3	MCF-7	breast:
3	chr10:93691319..93694139-chr10:93697959..93699903,2	K562	blood:
4	chr10:93698323..93701055-chr10:93702611..93704544,2	K562	blood:
5	chr10:93686308..93687920-chr10:93697752..93699874,2	K562	blood:

Variant related genes	Relation type
ENSG00000095564	Chromatin interaction

rs_ID	r²[population]
rs10509640	0.90[LWK][hapmap];0.96[MKK][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs11186744	0.83[AFR][1000 genomes]
rs12252682	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12254369	0.83[AFR][1000 genomes]
rs12263639	0.83[YRI][hapmap]
rs12266974	0.83[AFR][1000 genomes]
rs2048901	0.90[LWK][hapmap];0.96[MKK][hapmap];0.83[YRI][hapmap]
rs4509678	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs7915659	0.85[AFR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
3	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
5	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
6	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
7	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:93690000-93709600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:93690600-93702800	Strong transcription	Fetal Thymus	thymus
10	chr10:93690800-93704000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
12	chr10:93691000-93709600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:93691400-93702000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr10:93691800-93707400	Strong transcription	Dnd41	blood
15	chr10:93691800-93716600	Weak transcription	NHLF	lung
16	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:93692000-93711400	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:93694400-93704400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:93695000-93702200	Strong transcription	Hela-S3	cervix
20	chr10:93695000-93707000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:93696400-93702200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr10:93696400-93711200	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:93696600-93703600	Weak transcription	Primary T cells from cord blood	blood
24	chr10:93696600-93705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr10:93696600-93711200	Weak transcription	Brain Angular Gyrus	brain
26	chr10:93696600-93713200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:93696800-93700600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:93696800-93700600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:93696800-93700600	Weak transcription	Ovary	ovary
30	chr10:93696800-93701200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:93696800-93701200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr10:93696800-93701600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:93696800-93701800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:93696800-93701800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr10:93696800-93701800	Weak transcription	NHEK	skin
36	chr10:93696800-93702000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:93696800-93702400	Weak transcription	HUVEC	blood vessel
38	chr10:93696800-93703600	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr10:93696800-93703600	Weak transcription	Fetal Lung	lung
40	chr10:93696800-93703600	Weak transcription	Gastric	stomach
41	chr10:93696800-93704000	Weak transcription	Brain Anterior Caudate	brain
42	chr10:93696800-93704400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr10:93696800-93708600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr10:93696800-93711200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:93696800-93711200	Weak transcription	K562	blood
46	chr10:93696800-93711400	Weak transcription	Stomach Smooth Muscle	stomach
47	chr10:93696800-93711600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:93696800-93712000	Weak transcription	Psoas Muscle	Psoas
49	chr10:93696800-93712000	Weak transcription	Right Ventricle	heart
50	chr10:93696800-93712200	Weak transcription	Aorta	Aorta

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