Variant report

Variant	rs11186744
Chromosome Location	chr10:93678848-93678849
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93671121..93672813-chr10:93676893..93679119,2	MCF-7	breast:
2	chr10:93676745..93679722-chr10:93682211..93684896,3	K562	blood:
3	chr10:93676495..93679722-chr10:93681322..93683503,3	MCF-7	breast:
4	chr10:93668816..93671584-chr10:93677918..93680819,3	K562	blood:
5	chr10:93676486..93679461-chr10:93682211..93684652,4	K562	blood:

Variant related genes	Relation type
ENSG00000095564	Chromatin interaction
ENSG00000174721	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10430650	0.88[ASN][1000 genomes]
rs10509640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786024	0.86[ASN][1000 genomes]
rs10786025	0.85[ASN][1000 genomes]
rs10786026	0.85[ASN][1000 genomes]
rs10786027	0.83[ASN][1000 genomes]
rs12241256	0.83[AFR][1000 genomes]
rs12251446	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12253972	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12254369	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12259055	0.85[ASN][1000 genomes]
rs12262352	0.85[ASN][1000 genomes]
rs12263532	0.88[ASN][1000 genomes]
rs12263639	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12266974	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12267763	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12765070	0.85[ASN][1000 genomes]
rs1581240	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17107211	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2048901	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2252200	0.85[ASN][1000 genomes]
rs2676806	0.81[ASN][1000 genomes]
rs2676821	0.85[ASN][1000 genomes]
rs2676823	0.85[ASN][1000 genomes]
rs2676824	0.83[ASN][1000 genomes]
rs2792019	0.85[ASN][1000 genomes]
rs4288679	0.88[ASN][1000 genomes]
rs4509678	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4642987	0.85[ASN][1000 genomes]
rs4933703	0.85[ASN][1000 genomes]
rs7070076	0.84[ASN][1000 genomes]
rs7071659	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077506	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7901434	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7904900	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7909870	0.85[ASN][1000 genomes]
rs7911552	0.85[ASN][1000 genomes]
rs7912721	0.85[ASN][1000 genomes]
rs7915659	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7924014	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs833368	0.85[ASN][1000 genomes]
rs833383	0.82[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93669400-93682800	Weak transcription	Pancreas	Pancrea
2	chr10:93678800-93679000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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