Variant report

Variant	rs12263532
Chromosome Location	chr10:93691456-93691457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93691322..93693028-chr10:93702196..93704196,2	K562	blood:
2	chr10:93682327..93685380-chr10:93690100..93694062,4	K562	blood:
3	chr10:93685141..93688099-chr10:93690647..93693379,2	MCF-7	breast:
4	chr10:93591645..93593873-chr10:93689948..93691908,2	K562	blood:
5	chr10:93688641..93690594-chr10:93691267..93693874,2	K562	blood:
6	chr10:93681915..93684932-chr10:93689132..93694686,7	MCF-7	breast:
7	chr10:93691329..93694139-chr10:93698403..93701302,2	K562	blood:
8	chr10:93691319..93694139-chr10:93697959..93699903,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10430650	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509640	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10786024	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786025	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786026	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786027	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882019	0.93[JPT][hapmap]
rs1104012	0.91[JPT][hapmap]
rs11186744	0.88[ASN][1000 genomes]
rs11817194	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12251446	0.85[ASN][1000 genomes]
rs12253972	0.87[ASN][1000 genomes]
rs12254369	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12256118	0.93[JPT][hapmap]
rs12259055	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12262352	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12263639	0.87[ASN][1000 genomes]
rs12267763	0.87[ASN][1000 genomes]
rs12765070	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17107211	0.80[ASN][1000 genomes]
rs1711850	0.93[JPT][hapmap]
rs1935864	0.93[JPT][hapmap]
rs2048901	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2252200	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676806	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2676821	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676823	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676824	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2792019	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4288679	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4509678	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4642987	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933703	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6583801	0.93[JPT][hapmap]
rs7070076	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7071659	0.87[ASN][1000 genomes]
rs7076665	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7901434	0.87[ASN][1000 genomes]
rs7909870	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7911552	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7912721	0.86[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7915659	0.87[ASN][1000 genomes]
rs7924014	0.86[ASN][1000 genomes]
rs833364	0.93[JPT][hapmap]
rs833365	0.93[JPT][hapmap]
rs833368	0.93[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs833380	0.93[JPT][hapmap]
rs833383	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684200-93691800	Weak transcription	Lung	lung
2	chr10:93684200-93692600	Weak transcription	Spleen	Spleen
3	chr10:93684200-93694000	Weak transcription	Esophagus	oesophagus
4	chr10:93684400-93692600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:93685000-93695600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:93685000-93695800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:93685000-93696000	Weak transcription	Aorta	Aorta
9	chr10:93685000-93696000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:93685000-93696400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
12	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
14	chr10:93685200-93694400	Weak transcription	Fetal Kidney	kidney
15	chr10:93685200-93695400	Weak transcription	NH-A	brain
16	chr10:93685800-93695400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
18	chr10:93686000-93694200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:93686000-93695000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:93686200-93692400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:93686400-93691600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:93686600-93694000	Weak transcription	Thymus	Thymus
23	chr10:93686600-93694200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:93686600-93696000	Weak transcription	Brain Germinal Matrix	brain
25	chr10:93686800-93691600	Weak transcription	Fetal Lung	lung
26	chr10:93686800-93694200	Weak transcription	HMEC	breast
27	chr10:93686800-93695000	Weak transcription	Hela-S3	cervix
28	chr10:93686800-93695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:93687000-93695200	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
31	chr10:93689200-93692800	Strong transcription	Primary B cells from cord blood	blood
32	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr10:93690000-93691800	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr10:93690000-93692000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr10:93690000-93692000	Enhancers	Brain Substantia Nigra	brain
36	chr10:93690000-93709600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:93690200-93692000	Enhancers	Colon Smooth Muscle	Colon
38	chr10:93690200-93692600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:93690200-93692800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr10:93690200-93693000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr10:93690400-93692600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:93690400-93696000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr10:93690600-93691600	Weak transcription	K562	blood
44	chr10:93690600-93692600	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr10:93690600-93693000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr10:93690600-93698600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:93690600-93702800	Strong transcription	Fetal Thymus	thymus
48	chr10:93690800-93691600	ZNF genes & repeats	GM12878-XiMat	blood
49	chr10:93690800-93691800	Strong transcription	HepG2	liver
50	chr10:93690800-93693000	Genic enhancers	Primary T helper cells PMA-I stimulated	--

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