Variant report

Variant	rs10786024
Chromosome Location	chr10:93694897-93694898
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93687610..93690997-chr10:93694817..93697493,3	K562	blood:
2	chr10:93681420..93686127-chr10:93694549..93698227,7	K562	blood:
3	chr10:93667207..93669269-chr10:93693432..93695426,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095564	Chromatin interaction
ENSG00000272817	Chromatin interaction
ENSG00000174721	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10430650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10509640	0.88[ASN][1000 genomes]
rs10786025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786026	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786027	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186744	0.86[ASN][1000 genomes]
rs12251446	0.87[ASN][1000 genomes]
rs12253972	0.89[ASN][1000 genomes]
rs12254369	0.89[ASN][1000 genomes]
rs12259055	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12262352	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12263532	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12263639	0.89[ASN][1000 genomes]
rs12267763	0.89[ASN][1000 genomes]
rs12765070	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2048901	0.89[ASN][1000 genomes]
rs2252200	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2676806	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2676821	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2676823	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2676824	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2792019	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4288679	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4509678	0.89[ASN][1000 genomes]
rs4642987	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933703	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7070076	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7071659	0.89[ASN][1000 genomes]
rs7076665	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7901434	0.89[ASN][1000 genomes]
rs7904900	0.81[ASN][1000 genomes]
rs7909870	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7911552	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7912721	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915659	0.91[ASN][1000 genomes]
rs7924014	0.90[ASN][1000 genomes]
rs833368	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs833383	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93685000-93695600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:93685000-93695800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr10:93685000-93696000	Weak transcription	Aorta	Aorta
5	chr10:93685000-93696000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:93685000-93696400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr10:93685000-93703600	Weak transcription	Colonic Mucosa	Colon
8	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
10	chr10:93685200-93695400	Weak transcription	NH-A	brain
11	chr10:93685800-93695400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
13	chr10:93686000-93695000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:93686600-93696000	Weak transcription	Brain Germinal Matrix	brain
15	chr10:93686800-93695000	Weak transcription	Hela-S3	cervix
16	chr10:93686800-93695200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:93687000-93695200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
19	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr10:93690000-93709600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:93690400-93696000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:93690600-93698600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr10:93690600-93702800	Strong transcription	Fetal Thymus	thymus
24	chr10:93690800-93704000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
26	chr10:93691000-93695000	Weak transcription	HUVEC	blood vessel
27	chr10:93691000-93695800	Weak transcription	NHDF-Ad	bronchial
28	chr10:93691000-93697600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr10:93691000-93709600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:93691200-93696000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:93691400-93698000	Strong transcription	A549	lung
32	chr10:93691400-93698400	Strong transcription	HSMM	muscle
33	chr10:93691400-93702000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:93691600-93696200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:93691800-93695000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:93691800-93695200	Weak transcription	HepG2	liver
37	chr10:93691800-93695800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr10:93691800-93695800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:93691800-93696000	Weak transcription	Gastric	stomach
40	chr10:93691800-93696800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr10:93691800-93707400	Strong transcription	Dnd41	blood
42	chr10:93691800-93716600	Weak transcription	NHLF	lung
43	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:93692000-93695000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:93692000-93695000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr10:93692000-93695000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:93692000-93695000	Weak transcription	Left Ventricle	heart
48	chr10:93692000-93695200	Weak transcription	Brain Angular Gyrus	brain
49	chr10:93692000-93695400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr10:93692000-93695600	Weak transcription	Muscle Satellite Cultured Cells	--

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