Variant report

Variant	rs833383
Chromosome Location	chr10:93758689-93758690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10430650	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10509640	0.83[ASN][1000 genomes]
rs10786024	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786025	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786026	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786027	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186744	0.82[ASN][1000 genomes]
rs12251446	0.86[ASN][1000 genomes]
rs12253972	0.88[ASN][1000 genomes]
rs12254369	0.88[ASN][1000 genomes]
rs12259055	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12262352	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12263532	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12263639	0.88[ASN][1000 genomes]
rs12267763	0.88[ASN][1000 genomes]
rs12765070	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2048901	0.88[ASN][1000 genomes]
rs2252200	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2676806	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2676821	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2676823	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2676824	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2792019	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2792024	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4288679	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4509678	0.88[ASN][1000 genomes]
rs4642987	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933703	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7070076	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7071659	0.88[ASN][1000 genomes]
rs7076665	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7901434	0.88[ASN][1000 genomes]
rs7909870	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7911552	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7912721	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7915659	0.86[ASN][1000 genomes]
rs7924014	0.87[ASN][1000 genomes]
rs833368	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93704800-93807400	Weak transcription	Gastric	stomach
2	chr10:93709000-93771800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:93714600-93768000	Weak transcription	Right Ventricle	heart
4	chr10:93718400-93774000	Weak transcription	Spleen	Spleen
5	chr10:93719400-93761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:93723800-93786600	Weak transcription	Colonic Mucosa	Colon
7	chr10:93729800-93765600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:93734800-93763400	Strong transcription	Dnd41	blood
9	chr10:93736200-93784400	Weak transcription	Pancreas	Pancrea
10	chr10:93740200-93766200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:93740400-93761000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr10:93740400-93764400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:93740400-93770800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:93741400-93761400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:93743000-93795000	Weak transcription	Stomach Mucosa	stomach
16	chr10:93743400-93770200	Weak transcription	Brain Angular Gyrus	brain
17	chr10:93743400-93770600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:93743600-93759200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:93743600-93772800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:93743600-93772800	Weak transcription	Lung	lung
21	chr10:93743600-93786400	Weak transcription	Aorta	Aorta
22	chr10:93744400-93761200	Weak transcription	Fetal Heart	heart
23	chr10:93745000-93768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:93745000-93797200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:93745600-93778800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr10:93746200-93760800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:93746600-93761200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:93747200-93761000	Strong transcription	Fetal Muscle Leg	muscle
29	chr10:93748600-93760600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:93748600-93761600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:93748600-93773400	Weak transcription	Psoas Muscle	Psoas
32	chr10:93749200-93760200	Weak transcription	Brain Germinal Matrix	brain
33	chr10:93749400-93768000	Weak transcription	HepG2	liver
34	chr10:93749400-93768800	Weak transcription	NHLF	lung
35	chr10:93749400-93770000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:93749600-93792200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr10:93750000-93768200	Weak transcription	Brain Substantia Nigra	brain
38	chr10:93750000-93768800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr10:93751200-93759200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr10:93751200-93762400	Strong transcription	Osteobl	bone
41	chr10:93751400-93760800	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr10:93751400-93765000	Strong transcription	Fetal Thymus	thymus
43	chr10:93751400-93766200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:93751600-93759400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr10:93751600-93760200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:93751600-93762400	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr10:93751600-93762600	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:93751800-93759200	Strong transcription	Fetal Lung	lung
49	chr10:93751800-93759600	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr10:93751800-93759600	Strong transcription	Duodenum Smooth Muscle	Duodenum

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