Variant report

Variant	rs2676806
Chromosome Location	chr10:93751259-93751260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:93751145-93751379	HepG2	liver:	n/a	n/a
2	POLR2A	chr10:93751085-93751284	K562	blood:	n/a	n/a
3	POLR2A	chr10:93751060-93752038	K562	blood:	n/a	n/a
4	POLR2A	chr10:93751036-93751308	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93751005..93753979-chr10:93756542..93758224,3	MCF-7	breast:

Variant related genes	Relation type
BTAF1	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10430650	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10509640	0.83[ASN][1000 genomes]
rs10786024	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786025	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786026	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786027	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11186744	0.81[ASN][1000 genomes]
rs12251446	0.86[ASN][1000 genomes]
rs12253972	0.88[ASN][1000 genomes]
rs12254369	0.88[ASN][1000 genomes]
rs12259055	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12262352	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12263532	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12263639	0.88[ASN][1000 genomes]
rs12267763	0.88[ASN][1000 genomes]
rs12765070	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2048901	0.88[ASN][1000 genomes]
rs2252200	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676821	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676823	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2676824	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2792019	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2792024	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4288679	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4509678	0.88[ASN][1000 genomes]
rs4642987	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933703	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7070076	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7071659	0.88[ASN][1000 genomes]
rs7076665	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7901434	0.88[ASN][1000 genomes]
rs7909870	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7911552	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7912721	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7915659	0.86[ASN][1000 genomes]
rs7924014	0.87[ASN][1000 genomes]
rs833368	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs833383	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93704800-93807400	Weak transcription	Gastric	stomach
2	chr10:93709000-93771800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:93714600-93768000	Weak transcription	Right Ventricle	heart
4	chr10:93718400-93774000	Weak transcription	Spleen	Spleen
5	chr10:93719400-93761000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:93720000-93757400	Weak transcription	Small Intestine	intestine
7	chr10:93720400-93757400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:93723800-93786600	Weak transcription	Colonic Mucosa	Colon
9	chr10:93728000-93757400	Weak transcription	Fetal Brain Male	brain
10	chr10:93728600-93751600	Weak transcription	K562	blood
11	chr10:93729800-93765600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:93734800-93763400	Strong transcription	Dnd41	blood
13	chr10:93736200-93755400	Weak transcription	Esophagus	oesophagus
14	chr10:93736200-93784400	Weak transcription	Pancreas	Pancrea
15	chr10:93740200-93766200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:93740400-93761000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr10:93740400-93764400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr10:93740400-93770800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:93741400-93761400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:93743000-93754200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:93743000-93795000	Weak transcription	Stomach Mucosa	stomach
22	chr10:93743400-93770200	Weak transcription	Brain Angular Gyrus	brain
23	chr10:93743400-93770600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:93743600-93752400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:93743600-93753400	Weak transcription	Left Ventricle	heart
26	chr10:93743600-93757400	Weak transcription	Ovary	ovary
27	chr10:93743600-93759200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:93743600-93772800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:93743600-93772800	Weak transcription	Lung	lung
30	chr10:93743600-93786400	Weak transcription	Aorta	Aorta
31	chr10:93744000-93752000	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr10:93744200-93752600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:93744400-93761200	Weak transcription	Fetal Heart	heart
34	chr10:93744600-93751800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:93745000-93768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr10:93745000-93797200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr10:93745400-93751800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:93745400-93752200	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:93745400-93757400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:93745600-93778800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:93746200-93760800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:93746600-93751600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:93746600-93761200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:93747200-93761000	Strong transcription	Fetal Muscle Leg	muscle
45	chr10:93747600-93755600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:93748000-93752800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr10:93748600-93760600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:93748600-93761600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr10:93748600-93773400	Weak transcription	Psoas Muscle	Psoas
50	chr10:93748800-93758400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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