Variant report

Variant	rs7904900
Chromosome Location	chr10:93706792-93706793
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10509640	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10786024	0.81[ASN][1000 genomes]
rs10786025	0.81[ASN][1000 genomes]
rs10786026	0.81[ASN][1000 genomes]
rs11186744	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11593805	0.86[AFR][1000 genomes]
rs12251446	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12253972	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12254369	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12259055	0.81[ASN][1000 genomes]
rs12262352	0.81[ASN][1000 genomes]
rs12263639	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12266974	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12267763	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12765070	0.82[ASN][1000 genomes]
rs1581240	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17107211	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2048901	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2252200	0.81[ASN][1000 genomes]
rs2676821	0.81[ASN][1000 genomes]
rs2676823	0.81[ASN][1000 genomes]
rs2792019	0.81[ASN][1000 genomes]
rs4509678	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4642987	0.82[ASN][1000 genomes]
rs4933703	0.81[ASN][1000 genomes]
rs7070076	0.80[ASN][1000 genomes]
rs7071659	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7077506	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7901434	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7909870	0.81[ASN][1000 genomes]
rs7911552	0.81[ASN][1000 genomes]
rs7912721	0.81[ASN][1000 genomes]
rs7915659	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7924014	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs833368	0.81[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
3	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
4	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
5	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:93690000-93709600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
8	chr10:93691000-93709600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:93691800-93707400	Strong transcription	Dnd41	blood
10	chr10:93691800-93716600	Weak transcription	NHLF	lung
11	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:93692000-93711400	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:93695000-93707000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr10:93696400-93711200	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:93696600-93711200	Weak transcription	Brain Angular Gyrus	brain
16	chr10:93696600-93713200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:93696800-93708600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:93696800-93711200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:93696800-93711200	Weak transcription	K562	blood
20	chr10:93696800-93711400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:93696800-93711600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:93696800-93712000	Weak transcription	Psoas Muscle	Psoas
23	chr10:93696800-93712000	Weak transcription	Right Ventricle	heart
24	chr10:93696800-93712200	Weak transcription	Aorta	Aorta
25	chr10:93696800-93712800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr10:93696800-93715000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr10:93696800-93716400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:93696800-93735600	Weak transcription	Pancreas	Pancrea
29	chr10:93697000-93717000	Weak transcription	Brain Substantia Nigra	brain
30	chr10:93697000-93718000	Weak transcription	Spleen	Spleen
31	chr10:93697000-93735600	Weak transcription	Esophagus	oesophagus
32	chr10:93697200-93711200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:93697200-93711800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:93697200-93712200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:93697200-93718400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:93697400-93711000	Weak transcription	HSMMtube	muscle
37	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:93698000-93711800	Weak transcription	A549	lung
39	chr10:93699600-93750600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr10:93700000-93708800	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:93700400-93707400	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr10:93700600-93707600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:93700800-93707200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:93700800-93717800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:93701000-93709400	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr10:93701200-93707000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:93701400-93708600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:93701600-93707000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:93701800-93708400	Weak transcription	Brain Germinal Matrix	brain
50	chr10:93701800-93714600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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