Variant report

Variant	rs11593805
Chromosome Location	chr10:93643899-93643900
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93642306..93644379-chr10:93658449..93661429,2	MCF-7	breast:
2	chr10:93643244..93645164-chr10:93648326..93650268,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10509635	0.82[ASN][1000 genomes]
rs10509638	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10509639	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11592379	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11592537	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11594021	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11594359	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11597639	0.81[ASN][1000 genomes]
rs11598220	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11598809	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11599407	0.82[ASN][1000 genomes]
rs1417730	0.85[ASN][1000 genomes]
rs1417731	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1538833	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17107004	0.82[ASN][1000 genomes]
rs17107010	0.82[ASN][1000 genomes]
rs17107019	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17107075	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17107084	0.85[ASN][1000 genomes]
rs17107090	0.85[ASN][1000 genomes]
rs17107109	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17107140	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2050914	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2096080	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2096081	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2185596	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2275646	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2421698	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3758501	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3808930	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41286940	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4373831	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68185109	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7067554	0.85[ASN][1000 genomes]
rs7067679	0.80[EUR][1000 genomes]
rs7072165	0.82[ASN][1000 genomes]
rs7076618	0.85[ASN][1000 genomes]
rs7091147	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7093641	0.83[ASN][1000 genomes]
rs7097415	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73327861	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73327866	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7894188	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7895548	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7904900	0.86[AFR][1000 genomes]
rs7906154	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7920215	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93640600-93644800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93642600-93645000	Enhancers	Placenta	Placenta
3	chr10:93643000-93644200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:93643000-93644200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:93643000-93644200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:93643000-93644200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr10:93643000-93644600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:93643000-93645600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:93643000-93645800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:93643000-93645800	Enhancers	Fetal Brain Male	brain
11	chr10:93643200-93644000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr10:93643200-93644000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:93643200-93644000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:93643200-93644000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:93643200-93644000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr10:93643200-93644000	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr10:93643200-93644000	Flanking Active TSS	Fetal Intestine Large	intestine
18	chr10:93643200-93644000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
19	chr10:93643200-93644000	Flanking Active TSS	NH-A	brain
20	chr10:93643200-93644000	Flanking Active TSS	NHEK	skin
21	chr10:93643200-93644000	Flanking Active TSS	Osteobl	bone
22	chr10:93643200-93644200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:93643200-93644200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr10:93643200-93644200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr10:93643200-93644200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:93643200-93644200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:93643200-93644200	Enhancers	Placenta Amnion	Placenta Amnion
28	chr10:93643200-93644200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr10:93643200-93644400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr10:93643200-93644400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:93643200-93644400	Enhancers	Colon Smooth Muscle	Colon
32	chr10:93643200-93644400	Enhancers	Fetal Stomach	stomach
33	chr10:93643200-93644800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr10:93643200-93644800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr10:93643200-93645000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:93643400-93644000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr10:93643400-93644000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr10:93643400-93644000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:93643400-93644000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:93643400-93644000	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr10:93643400-93644000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:93643400-93644000	Flanking Active TSS	Fetal Brain Female	brain
43	chr10:93643400-93644000	Enhancers	HMEC	breast
44	chr10:93643400-93644200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr10:93643400-93644400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:93643400-93644400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:93643400-93644400	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr10:93643400-93645200	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr10:93643400-93645600	Enhancers	Brain Substantia Nigra	brain
50	chr10:93643600-93644000	Flanking Active TSS	Brain Anterior Caudate	brain

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