Variant report

Variant	rs11594021
Chromosome Location	chr10:93630092-93630093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93623670..93626355-chr10:93627411..93630158,2	MCF-7	breast:
2	chr10:93628714..93630767-chr10:93634147..93636054,2	K562	blood:
3	chr10:93576673..93578768-chr10:93627898..93630166,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10509635	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10509638	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10509639	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11592379	0.88[ASN][1000 genomes]
rs11592537	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11593642	0.83[ASN][1000 genomes]
rs11593805	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11594359	0.88[ASN][1000 genomes]
rs11595800	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11597639	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11598220	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11598809	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11599407	0.88[ASN][1000 genomes]
rs1417730	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1417731	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1538833	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107004	0.88[ASN][1000 genomes]
rs17107010	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17107019	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17107075	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17107084	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17107090	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17107109	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107140	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2000139	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2050914	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096080	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2096081	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2105296	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2185596	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275646	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421693	0.83[ASN][1000 genomes]
rs2421698	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3758501	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3808930	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3949338	0.83[ASN][1000 genomes]
rs41286940	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4373831	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58521911	0.81[ASN][1000 genomes]
rs68185109	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7067554	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7067882	0.83[AMR][1000 genomes]
rs7072165	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7076618	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7080889	0.81[ASN][1000 genomes]
rs7091147	0.88[ASN][1000 genomes]
rs7093641	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7097415	0.88[ASN][1000 genomes]
rs73325913	0.81[ASN][1000 genomes]
rs73325918	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73327861	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73327866	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7894188	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7895548	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906154	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7920215	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv511445	chr10:93627158-93635541	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93599600-93634600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:93606400-93630200	Weak transcription	Esophagus	oesophagus
3	chr10:93608800-93639200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:93608800-93643400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:93618400-93639400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:93620600-93631000	Weak transcription	HepG2	liver
7	chr10:93622600-93639000	Weak transcription	Brain Germinal Matrix	brain
8	chr10:93622800-93639200	Weak transcription	Brain Angular Gyrus	brain
9	chr10:93624200-93630200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:93624200-93634400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr10:93624200-93639200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:93625800-93632200	Weak transcription	HSMM	muscle
13	chr10:93625800-93634400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:93625800-93639000	Weak transcription	Fetal Brain Female	brain
15	chr10:93626200-93630200	Weak transcription	Adipose Nuclei	Adipose
16	chr10:93626200-93634800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:93626200-93639600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:93626200-93643000	Weak transcription	HSMMtube	muscle
19	chr10:93627000-93634400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:93627600-93639000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:93627600-93639600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:93627800-93639000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:93629200-93631600	Weak transcription	Placenta	Placenta
24	chr10:93629600-93634600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:93629600-93634800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:93629600-93638800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:93629600-93639000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:93629600-93639200	Weak transcription	H9 Cell Line	embryonic stem cell

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