Variant report

Variant	rs3808930
Chromosome Location	chr10:93557304-93557305
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr10:93556945-93557525	MCF-7	breast:	n/a	chr10:93557275-93557290
2	MXI1	chr10:93557289-93559806	IMR90	lung:	n/a	n/a
3	POLR2A	chr10:93556950-93557308	HepG2	liver:	n/a	n/a
4	POLR2A	chr10:93556830-93559405	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr10:93557202-93559639	GM12891	blood:	n/a	n/a
6	POLR2A	chr10:93556935-93557396	MCF-7	breast:	n/a	n/a
7	TBL1XR1	chr10:93557264-93557395	GM12878	blood:	n/a	n/a
8	CUX1	chr10:93556840-93557574	K562	blood:	n/a	n/a
9	POLR2A	chr10:93557235-93559315	Raji	blood:	n/a	n/a
10	NR2F2	chr10:93556980-93557584	MCF-7	breast:	n/a	chr10:93557275-93557290
11	CHD1	chr10:93556973-93559802	IMR90	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93525967..93528056-chr10:93556170..93559024,2	MCF-7	breast:
2	chr10:93555222..93557965-chr10:93666465..93668632,2	MCF-7	breast:
3	chr10:93556770..93559224-chr10:93566498..93569343,3	MCF-7	breast:
4	chr10:93168839..93171584-chr10:93557037..93559095,2	K562	blood:
5	chr10:93525891..93528491-chr10:93557186..93559232,2	MCF-7	breast:

No data

Variant related genes	Relation type
TNKS2	TF binding region
ENSG00000180581	Chromatin interaction
ENSG00000272817	Chromatin interaction
ENSG00000228759	Chromatin interaction
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10509635	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10509638	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10509639	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10881948	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1114700	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11591329	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11591524	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11592233	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592289	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11592379	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11592537	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592805	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11592842	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11593642	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11593805	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11594021	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11594359	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11595459	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11595800	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11597639	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11598220	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11598809	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11599407	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12252794	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1417730	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1417731	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1418164	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1418165	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1538833	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17106928	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17106936	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17107004	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107010	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107019	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17107075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107084	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107090	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17107109	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17107140	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2000139	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2039973	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2039974	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2050914	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2096080	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096081	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2105296	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2185596	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2275646	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2421693	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2421698	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28687467	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3758501	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3949338	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41286940	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4144399	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4373831	0.83[ASN][1000 genomes]
rs4531370	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56111545	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57762415	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58485305	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58521911	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59065354	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59474225	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68185109	0.82[ASN][1000 genomes]
rs7067554	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7067679	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7067694	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7067882	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7068311	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7068403	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7072165	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7076618	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7077513	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7080889	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7083631	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7091147	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7093641	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094100	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7096671	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7097415	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73323962	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73323974	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73323992	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73323996	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73323998	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73324002	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73325905	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73325906	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73325913	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73325918	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73327861	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73327866	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs74151714	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7894188	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895548	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7906154	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917457	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7920215	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9663682	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9665431	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9665459	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93555800-93558000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:93555800-93558000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:93556000-93557400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:93556000-93557600	Flanking Active TSS	Dnd41	blood
5	chr10:93556000-93558000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr10:93556000-93558000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr10:93556000-93560000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:93556000-93560000	Active TSS	Aorta	Aorta
9	chr10:93556000-93560000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:93556000-93560200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:93556000-93560200	Active TSS	Stomach Smooth Muscle	stomach
12	chr10:93556000-93560800	Active TSS	Right Atrium	heart
13	chr10:93556000-93561200	Active TSS	Ovary	ovary
14	chr10:93556200-93557400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr10:93556200-93557400	Flanking Active TSS	Fetal Thymus	thymus
16	chr10:93556200-93557600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr10:93556200-93557600	Flanking Active TSS	HepG2	liver
18	chr10:93556200-93557600	Flanking Active TSS	Osteobl	bone
19	chr10:93556200-93557800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr10:93556200-93557800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr10:93556200-93557800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
22	chr10:93556200-93557800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr10:93556200-93557800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:93556200-93557800	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr10:93556200-93557800	Flanking Active TSS	NHEK	skin
26	chr10:93556200-93558000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:93556200-93558000	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr10:93556200-93558000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr10:93556200-93558000	Flanking Active TSS	HMEC	breast
30	chr10:93556200-93559800	Active TSS	Fetal Stomach	stomach
31	chr10:93556200-93560000	Active TSS	Colonic Mucosa	Colon
32	chr10:93556200-93560200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:93556200-93560200	Active TSS	Right Ventricle	heart
34	chr10:93556200-93560800	Active TSS	Psoas Muscle	Psoas
35	chr10:93556200-93562000	Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr10:93556400-93557400	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr10:93556400-93557400	Flanking Active TSS	Fetal Lung	lung
38	chr10:93556400-93557600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:93556400-93557600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr10:93556400-93557600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr10:93556400-93557600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:93556400-93557600	Flanking Active TSS	Liver	Liver
43	chr10:93556400-93557800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:93556400-93558000	Flanking Active TSS	Primary hematopoietic stem cells	blood
45	chr10:93556400-93558000	Flanking Active TSS	HUVEC	blood vessel
46	chr10:93556400-93559800	Active TSS	Primary T cells fromperipheralblood	blood
47	chr10:93556600-93557400	Flanking Active TSS	Fetal Heart	heart
48	chr10:93556600-93557400	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr10:93556600-93557400	Flanking Active TSS	Thymus	Thymus
50	chr10:93556600-93557600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

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