Variant report

Variant	rs4373831
Chromosome Location	chr10:93647749-93647750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93645639..93650363-chr10:93664527..93668609,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272817	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10509635	1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs10509638	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10509639	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11592379	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs11592537	0.83[ASN][1000 genomes]
rs11593805	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11594021	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11594359	1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs11597639	0.81[ASN][1000 genomes]
rs11598220	1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11598809	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs11599407	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1417730	0.85[ASN][1000 genomes]
rs1417731	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1538833	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17107004	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17107010	0.82[ASN][1000 genomes]
rs17107019	1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs17107075	0.85[ASN][1000 genomes]
rs17107084	0.85[ASN][1000 genomes]
rs17107090	0.85[ASN][1000 genomes]
rs17107109	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17107140	0.92[ASN][1000 genomes]
rs2000139	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs2050914	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2096080	0.83[ASN][1000 genomes]
rs2096081	0.83[ASN][1000 genomes]
rs2185596	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2275646	1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2421698	1.00[CHB][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3758501	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3808930	0.83[ASN][1000 genomes]
rs41286940	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68185109	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7067554	0.85[ASN][1000 genomes]
rs7072165	1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs7076618	1.00[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs7091015	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs7091147	0.82[ASN][1000 genomes]
rs7093641	0.83[ASN][1000 genomes]
rs7097415	0.82[ASN][1000 genomes]
rs73327861	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73327866	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7894188	0.83[ASN][1000 genomes]
rs7895548	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7906154	0.83[ASN][1000 genomes]
rs7920215	0.89[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93644200-93648600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:93645800-93649400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:93646600-93648000	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr10:93646600-93648400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:93646800-93647800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:93646800-93647800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr10:93646800-93647800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
8	chr10:93646800-93647800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:93646800-93647800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:93646800-93647800	Active TSS	Brain Anterior Caudate	brain
11	chr10:93646800-93647800	Active TSS	Brain Cingulate Gyrus	brain
12	chr10:93646800-93647800	Active TSS	Brain Hippocampus Middle	brain
13	chr10:93646800-93647800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:93646800-93647800	Active TSS	Brain Substantia Nigra	brain
15	chr10:93646800-93647800	Flanking Active TSS	Fetal Muscle Leg	muscle
16	chr10:93646800-93647800	Active TSS	Right Atrium	heart
17	chr10:93646800-93648000	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr10:93646800-93648000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr10:93646800-93648000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr10:93646800-93648000	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
21	chr10:93646800-93648000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:93646800-93648000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:93646800-93648000	Flanking Active TSS	Adipose Nuclei	Adipose
24	chr10:93646800-93648000	Active TSS	Aorta	Aorta
25	chr10:93646800-93648000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr10:93646800-93648000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr10:93646800-93648000	Flanking Active TSS	Fetal Brain Male	brain
28	chr10:93646800-93648000	Active TSS	Stomach Smooth Muscle	stomach
29	chr10:93646800-93648000	Flanking Active TSS	HUVEC	blood vessel
30	chr10:93646800-93648000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
31	chr10:93646800-93648000	Flanking Active TSS	NH-A	brain
32	chr10:93646800-93648000	Flanking Active TSS	NHEK	skin
33	chr10:93647000-93647800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
34	chr10:93647000-93647800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:93647000-93647800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:93647000-93647800	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
37	chr10:93647000-93647800	Flanking Active TSS	Primary B cells from peripheral blood	blood
38	chr10:93647000-93647800	Flanking Active TSS	Primary hematopoietic stem cells	blood
39	chr10:93647000-93647800	Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr10:93647000-93647800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr10:93647000-93647800	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr10:93647000-93647800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
43	chr10:93647000-93647800	Flanking Active TSS	Placenta	Placenta
44	chr10:93647000-93647800	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
45	chr10:93647000-93647800	Active TSS	Gastric	stomach
46	chr10:93647000-93647800	Flanking Active TSS	Placenta Amnion	Placenta Amnion
47	chr10:93647000-93647800	Active TSS	Rectal Smooth Muscle	rectum
48	chr10:93647000-93647800	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
49	chr10:93647000-93647800	Flanking Active TSS	HMEC	breast
50	chr10:93647000-93647800	Active TSS	NHDF-Ad	bronchial

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