Variant report

Variant	rs2275646
Chromosome Location	chr10:93586715-93586716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93585192..93587145-chr10:93667563..93669738,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174721	Chromatin interaction
ENSG00000272817	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10509635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10509638	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11592407	0.88[CEU][hapmap]
rs11592537	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11593642	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11593805	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11594021	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11594359	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11595800	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11597639	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11598220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598809	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11599407	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1417730	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1417731	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1418164	0.83[AMR][1000 genomes]
rs1418165	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1538833	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539042	0.84[JPT][hapmap]
rs17107004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17107010	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17107019	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17107075	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107084	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107090	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107109	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107140	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1772189	0.84[JPT][hapmap]
rs2000139	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2039973	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2039974	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2050914	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096080	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2096081	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2105296	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2185596	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421693	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2421698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758501	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802650	0.84[JPT][hapmap]
rs3808930	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3949338	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs41286940	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4373831	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4531370	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs57762415	0.81[ASN][1000 genomes]
rs58485305	0.81[ASN][1000 genomes]
rs58521911	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59065354	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59474225	0.81[ASN][1000 genomes]
rs68185109	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7067554	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7067679	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7067694	0.85[AMR][1000 genomes]
rs7067882	0.85[AMR][1000 genomes]
rs7068311	0.80[AMR][1000 genomes]
rs7068403	0.85[AMR][1000 genomes]
rs7072165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7072687	0.88[CEU][hapmap]
rs7076618	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077513	0.81[AMR][1000 genomes]
rs7080889	0.83[ASN][1000 genomes]
rs7083631	0.85[AMR][1000 genomes]
rs7091015	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs7091147	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7093641	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7097415	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73323974	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73323992	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73323998	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73324002	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73325905	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73325906	0.81[ASN][1000 genomes]
rs73325913	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73325918	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73327861	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73327866	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7894188	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7895548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906154	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7920215	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9663682	0.81[ASN][1000 genomes]
rs9665431	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9665459	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:93567200-93624200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:93569200-93626800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:93570000-93608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:93570800-93625000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:93570800-93626000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:93570800-93626000	Strong transcription	Dnd41	blood
9	chr10:93571000-93623200	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:93571000-93624000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr10:93571000-93625800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:93571200-93626400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:93571400-93592800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:93571400-93626400	Strong transcription	Liver	Liver
15	chr10:93571400-93626400	Strong transcription	Fetal Thymus	thymus
16	chr10:93572000-93589600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:93572000-93626200	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr10:93572000-93626400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr10:93572000-93626400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr10:93572200-93591000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:93572200-93623600	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr10:93572200-93625600	Strong transcription	Placenta	Placenta
23	chr10:93572200-93626400	Strong transcription	Primary B cells from cord blood	blood
24	chr10:93572400-93595200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:93572400-93623000	Strong transcription	H1 Cell Line	embryonic stem cell
26	chr10:93572400-93624400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr10:93572400-93624800	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr10:93572400-93626000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:93572400-93626000	Strong transcription	Primary B cells from peripheral blood	blood
30	chr10:93572400-93626000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:93572400-93626200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:93572400-93626200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr10:93572600-93590200	Strong transcription	GM12878-XiMat	blood
34	chr10:93572600-93591600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:93572600-93592600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:93572600-93611800	Strong transcription	Osteobl	bone
37	chr10:93572600-93613200	Strong transcription	NH-A	brain
38	chr10:93572600-93624400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:93572600-93626200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:93572600-93626200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr10:93572600-93626200	Strong transcription	Adipose Nuclei	Adipose
42	chr10:93572600-93626600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:93572600-93629000	Weak transcription	Stomach Mucosa	stomach
44	chr10:93572800-93596200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr10:93572800-93600800	Strong transcription	Fetal Intestine Large	intestine
46	chr10:93572800-93626200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr10:93573000-93626200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr10:93573200-93592200	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:93573400-93624400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr10:93574000-93606400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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