Variant report

Variant	rs7072687
Chromosome Location	chr10:93428776-93428777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93411332..93412973-chr10:93428669..93431138,2	MCF-7	breast:
2	chr10:93428056..93430246-chr10:93430391..93432462,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10509630	0.89[CEU][hapmap]
rs10509633	0.89[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10509635	0.89[CEU][hapmap]
rs11186647	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11592379	0.89[CEU][hapmap]
rs11592407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594359	0.89[CEU][hapmap]
rs11597380	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11598220	0.88[CEU][hapmap]
rs11598778	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11599407	0.88[CEU][hapmap]
rs1418155	0.89[CEU][hapmap]
rs17106843	0.89[CEU][hapmap]
rs17106882	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17107004	0.89[CEU][hapmap]
rs17107019	0.85[CEU][hapmap]
rs2000139	0.89[CEU][hapmap]
rs2275646	0.88[CEU][hapmap]
rs2421698	0.89[CEU][hapmap]
rs3781228	0.88[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4551673	0.89[ASN][1000 genomes]
rs4933218	0.93[ASN][1000 genomes]
rs57754500	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7072165	0.88[CEU][hapmap]
rs7076515	0.86[ASN][1000 genomes]
rs7076618	0.88[CEU][hapmap]
rs7086218	0.86[ASN][1000 genomes]
rs7091015	0.88[CEU][hapmap]
rs73320144	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73322039	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73322041	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73322085	0.86[ASN][1000 genomes]
rs73323903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73323929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894188	0.85[CEU][hapmap]
rs7895548	0.89[CEU][hapmap]
rs7920215	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948135	chr10:93423027-93430220	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93419200-93431400	Weak transcription	Psoas Muscle	Psoas
2	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:93425800-93432000	Weak transcription	Osteobl	bone
4	chr10:93427000-93443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:93427600-93431400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:93427600-93448800	Weak transcription	Liver	Liver
7	chr10:93428200-93429200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:93428200-93431200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:93428400-93429200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr10:93428400-93429400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:93428600-93428800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr10:93428600-93428800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr10:93428600-93429000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:93428600-93429000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:93428600-93429800	Enhancers	HUES6 Cell Line	embryonic stem cell

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