Variant report

Variant	rs3781228
Chromosome Location	chr10:93390680-93390681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93387435..93391591-chr10:93392416..93396501,4	K562	blood:
2	chr10:93389128..93391072-chr10:93391272..93395365,3	MCF-7	breast:
3	chr10:93383247..93385576-chr10:93389131..93391344,3	MCF-7	breast:
4	chr10:93347950..93349480-chr10:93389392..93391120,2	MCF-7	breast:
5	chr10:93320978..93323661-chr10:93390295..93392458,2	MCF-7	breast:
6	chr10:93168063..93170852-chr10:93390602..93395151,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509628	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10509630	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10509633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186647	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11591635	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11592407	0.88[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11594086	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11595816	0.88[EUR][1000 genomes]
rs11597380	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11597974	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11598778	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12571806	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418155	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418157	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418159	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1557116	0.88[ASN][1000 genomes]
rs17106808	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106816	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106882	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4590778	0.88[ASN][1000 genomes]
rs55954710	0.88[ASN][1000 genomes]
rs56122986	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57754500	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57867863	0.88[EUR][1000 genomes]
rs58198809	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59139525	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60214919	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60894624	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7072687	0.88[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7084791	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7089163	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7089286	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73318257	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73318277	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73318294	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73320142	0.88[ASN][1000 genomes]
rs73320144	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73322039	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73322041	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73323903	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73323929	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74149269	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74149270	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74149272	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs748401	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7893432	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7894061	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7902087	0.88[EUR][1000 genomes]
rs7919341	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93385000-93391800	Weak transcription	NH-A	brain
2	chr10:93385000-93392400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:93386400-93392600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:93387000-93392600	Transcr. at gene 5' and 3'	Fetal Lung	lung
5	chr10:93387200-93391400	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:93387200-93391800	Weak transcription	Stomach Mucosa	stomach
7	chr10:93387600-93391200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:93387800-93390800	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
9	chr10:93387800-93391000	Transcr. at gene 5' and 3'	Colon Smooth Muscle	Colon
10	chr10:93387800-93392400	Weak transcription	Placenta	Placenta
11	chr10:93387800-93392600	Weak transcription	Spleen	Spleen
12	chr10:93388000-93392200	Weak transcription	Gastric	stomach
13	chr10:93388000-93392600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:93388000-93393600	Active TSS	Right Atrium	heart
15	chr10:93388200-93391000	Transcr. at gene 5' and 3'	Osteobl	bone
16	chr10:93388400-93391000	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
17	chr10:93388400-93391200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
18	chr10:93388400-93391200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:93388400-93392600	ZNF genes & repeats	Fetal Heart	heart
20	chr10:93388600-93390800	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:93388600-93390800	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:93388600-93390800	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:93388600-93391000	Transcr. at gene 5' and 3'	Aorta	Aorta
24	chr10:93388600-93391000	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
25	chr10:93388600-93391000	Transcr. at gene 5' and 3'	Left Ventricle	heart
26	chr10:93388600-93391200	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:93388600-93391800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:93388600-93393600	Active TSS	Brain Angular Gyrus	brain
29	chr10:93388800-93391000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:93388800-93393600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:93389000-93391000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:93389000-93391200	Weak transcription	Brain Germinal Matrix	brain
33	chr10:93389000-93392600	ZNF genes & repeats	Fetal Brain Male	brain
34	chr10:93389200-93391000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr10:93389200-93391000	Active TSS	Lung	lung
36	chr10:93389200-93391200	Transcr. at gene 5' and 3'	NHDF-Ad	bronchial
37	chr10:93389200-93391800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:93389200-93393000	Active TSS	Duodenum Mucosa	Duodenum
39	chr10:93389400-93391000	Transcr. at gene 5' and 3'	HSMM	muscle
40	chr10:93389400-93393600	Active TSS	Right Ventricle	heart
41	chr10:93389600-93391000	Transcr. at gene 5' and 3'	Psoas Muscle	Psoas
42	chr10:93389600-93391200	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
43	chr10:93389600-93392200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:93389800-93391000	Flanking Active TSS	K562	blood
45	chr10:93390000-93390800	Strong transcription	Adipose Nuclei	Adipose
46	chr10:93390000-93390800	Genic enhancers	Fetal Intestine Large	intestine
47	chr10:93390000-93391000	Strong transcription	Ovary	ovary
48	chr10:93390000-93391800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:93390000-93393400	Active TSS	Brain Anterior Caudate	brain
50	chr10:93390200-93390800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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