Variant report

Variant	rs74149272
Chromosome Location	chr10:93370322-93370323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93368141..93371067-chr10:93374418..93377017,2	MCF-7	breast:
2	chr10:93368169..93371090-chr10:93379078..93381168,3	K562	blood:
3	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
4	chr10:93365300..93367131-chr10:93369836..93371716,2	K562	blood:
5	chr10:93368169..93371090-chr10:93379550..93381168,2	K562	blood:
6	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10509628	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10509630	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10509633	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11591635	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11594086	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11595816	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11597380	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11597974	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11598778	0.86[EUR][1000 genomes]
rs12571806	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418155	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418157	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418159	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1557116	0.90[ASN][1000 genomes]
rs17106808	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106816	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106843	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106882	0.90[EUR][1000 genomes]
rs3781228	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4590778	0.90[ASN][1000 genomes]
rs55954710	0.94[ASN][1000 genomes]
rs56122986	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57754500	0.86[EUR][1000 genomes]
rs57867863	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58198809	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59139525	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60214919	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60894624	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7084791	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7089163	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7089286	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73318257	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73318277	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73318294	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73320142	0.86[ASN][1000 genomes]
rs73320144	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73322039	0.89[EUR][1000 genomes]
rs73322041	0.90[EUR][1000 genomes]
rs74149269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149270	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748401	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7893432	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7894061	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7902087	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7919341	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93367200-93371600	Enhancers	Fetal Stomach	stomach
3	chr10:93367400-93371400	Enhancers	Psoas Muscle	Psoas
4	chr10:93367400-93371600	Enhancers	Fetal Muscle Leg	muscle
5	chr10:93367400-93372000	Enhancers	NHLF	lung
6	chr10:93367400-93373600	Enhancers	NHDF-Ad	bronchial
7	chr10:93367600-93371000	Enhancers	NH-A	brain
8	chr10:93368000-93371000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
10	chr10:93368800-93370400	Weak transcription	HMEC	breast
11	chr10:93368800-93370800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:93368800-93370800	Weak transcription	Placenta	Placenta
13	chr10:93368800-93370800	Weak transcription	Left Ventricle	heart
14	chr10:93368800-93371000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:93368800-93371000	Weak transcription	Lung	lung
16	chr10:93368800-93371400	Enhancers	A549	lung
17	chr10:93368800-93371400	Enhancers	Osteobl	bone
18	chr10:93368800-93372800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:93368800-93373000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:93368800-93373200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:93368800-93373600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:93368800-93373800	Weak transcription	Small Intestine	intestine
23	chr10:93369000-93370800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:93369000-93371200	Weak transcription	Esophagus	oesophagus
25	chr10:93369000-93371800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:93369000-93371800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:93369000-93371800	Enhancers	Rectal Smooth Muscle	rectum
28	chr10:93369000-93372000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:93369000-93372800	Weak transcription	HUVEC	blood vessel
30	chr10:93369000-93373200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:93369200-93370600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:93369200-93372000	Enhancers	Colon Smooth Muscle	Colon
34	chr10:93369200-93373200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:93369200-93373600	Weak transcription	Colonic Mucosa	Colon
36	chr10:93369400-93370600	Weak transcription	Brain Anterior Caudate	brain
37	chr10:93369400-93370800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:93369400-93370800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:93369400-93370800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr10:93369400-93371200	Weak transcription	Stomach Mucosa	stomach
41	chr10:93369400-93371800	Enhancers	Stomach Smooth Muscle	stomach
42	chr10:93369400-93371800	Enhancers	K562	blood
43	chr10:93369400-93372800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:93369400-93373000	Enhancers	Hela-S3	cervix
45	chr10:93369400-93373600	Weak transcription	Adipose Nuclei	Adipose
46	chr10:93369400-93378600	Weak transcription	Fetal Intestine Small	intestine
47	chr10:93369400-93379200	Weak transcription	Liver	Liver
48	chr10:93369600-93370600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:93369600-93370800	Weak transcription	HSMMtube	muscle
50	chr10:93369600-93373000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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