Variant report

Variant	rs7902087
Chromosome Location	chr10:93369453-93369454
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93368141..93371067-chr10:93374418..93377017,2	MCF-7	breast:
2	chr10:93168617..93171307-chr10:93366868..93369856,2	K562	blood:
3	chr10:93368169..93371090-chr10:93379078..93381168,3	K562	blood:
4	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
5	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
6	chr10:93368169..93371090-chr10:93379550..93381168,2	K562	blood:
7	chr10:93368025..93369544-chr10:93384747..93386329,2	K562	blood:
8	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10509628	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10509630	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10509633	0.88[EUR][1000 genomes]
rs10748561	0.92[ASN][1000 genomes]
rs10748562	0.92[ASN][1000 genomes]
rs11591635	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11594086	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11595816	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597380	0.88[EUR][1000 genomes]
rs11597974	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11598778	0.82[EUR][1000 genomes]
rs12571806	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1418155	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1418157	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1418159	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17106808	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17106816	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17106843	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17106882	0.86[EUR][1000 genomes]
rs1857059	0.92[ASN][1000 genomes]
rs2010902	0.92[ASN][1000 genomes]
rs2421615	0.92[ASN][1000 genomes]
rs2421617	0.92[ASN][1000 genomes]
rs3781228	0.88[EUR][1000 genomes]
rs4313484	0.90[ASN][1000 genomes]
rs4313485	0.92[ASN][1000 genomes]
rs4329593	0.92[ASN][1000 genomes]
rs4331000	0.92[ASN][1000 genomes]
rs4514319	0.92[ASN][1000 genomes]
rs4933211	0.92[ASN][1000 genomes]
rs56122986	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57754500	0.82[EUR][1000 genomes]
rs57867863	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58198809	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59139525	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60214919	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60894624	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7067622	0.90[ASN][1000 genomes]
rs7083815	0.92[ASN][1000 genomes]
rs7084791	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7089163	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7089286	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7101314	0.92[ASN][1000 genomes]
rs724585	0.92[ASN][1000 genomes]
rs724586	0.92[ASN][1000 genomes]
rs73318257	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73318277	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73318294	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73320144	0.89[EUR][1000 genomes]
rs73322039	0.85[EUR][1000 genomes]
rs73322041	0.86[EUR][1000 genomes]
rs74149269	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74149270	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74149272	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs748400	0.92[ASN][1000 genomes]
rs748401	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs748402	0.92[ASN][1000 genomes]
rs7893432	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7894061	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7911809	0.92[ASN][1000 genomes]
rs7919341	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93367200-93369800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:93367200-93371600	Enhancers	Fetal Stomach	stomach
4	chr10:93367400-93369800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:93367400-93369800	Enhancers	Ovary	ovary
6	chr10:93367400-93371400	Enhancers	Psoas Muscle	Psoas
7	chr10:93367400-93371600	Enhancers	Fetal Muscle Leg	muscle
8	chr10:93367400-93372000	Enhancers	NHLF	lung
9	chr10:93367400-93373600	Enhancers	NHDF-Ad	bronchial
10	chr10:93367600-93369600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:93367600-93371000	Enhancers	NH-A	brain
12	chr10:93367800-93369600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:93367800-93369600	Enhancers	Fetal Brain Male	brain
14	chr10:93368000-93369800	Flanking Active TSS	Fetal Heart	heart
15	chr10:93368000-93371000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
17	chr10:93368600-93370200	Weak transcription	Right Ventricle	heart
18	chr10:93368800-93369600	Enhancers	HSMM	muscle
19	chr10:93368800-93369600	Enhancers	NHEK	skin
20	chr10:93368800-93370200	Weak transcription	Aorta	Aorta
21	chr10:93368800-93370200	Weak transcription	Right Atrium	heart
22	chr10:93368800-93370400	Weak transcription	HMEC	breast
23	chr10:93368800-93370800	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:93368800-93370800	Weak transcription	Placenta	Placenta
25	chr10:93368800-93370800	Weak transcription	Left Ventricle	heart
26	chr10:93368800-93371000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:93368800-93371000	Weak transcription	Lung	lung
28	chr10:93368800-93371400	Enhancers	A549	lung
29	chr10:93368800-93371400	Enhancers	Osteobl	bone
30	chr10:93368800-93372800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr10:93368800-93373000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:93368800-93373200	Weak transcription	Duodenum Mucosa	Duodenum
33	chr10:93368800-93373600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:93368800-93373800	Weak transcription	Small Intestine	intestine
35	chr10:93369000-93369600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:93369000-93369800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:93369000-93370200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr10:93369000-93370800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:93369000-93371200	Weak transcription	Esophagus	oesophagus
40	chr10:93369000-93371800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:93369000-93371800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:93369000-93371800	Enhancers	Rectal Smooth Muscle	rectum
43	chr10:93369000-93372000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:93369000-93372800	Weak transcription	HUVEC	blood vessel
45	chr10:93369000-93373200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:93369200-93369600	Enhancers	Fetal Kidney	kidney
48	chr10:93369200-93370200	Weak transcription	Pancreas	Pancrea
49	chr10:93369200-93370600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:93369200-93372000	Enhancers	Colon Smooth Muscle	Colon

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