Variant report

Variant	rs4933211
Chromosome Location	chr10:93368163-93368164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
2	chr10:93363309..93366261-chr10:93366366..93368768,3	K562	blood:
3	chr10:93368141..93371067-chr10:93374418..93377017,2	MCF-7	breast:
4	chr10:93168617..93171307-chr10:93366868..93369856,2	K562	blood:
5	chr10:93366313..93369162-chr10:93391370..93392912,2	MCF-7	breast:
6	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
7	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
8	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:
9	chr10:93368025..93369544-chr10:93384747..93386329,2	K562	blood:
10	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10748561	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748562	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595816	0.92[ASN][1000 genomes]
rs1857059	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010902	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421615	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421617	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4313485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4329593	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331000	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867863	0.92[ASN][1000 genomes]
rs7067622	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083815	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101314	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724585	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724586	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748400	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748402	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902087	0.92[ASN][1000 genomes]
rs7911809	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs4933211	TNKS2	cis	parietal	SCAN
rs4933211	BTAF1	cis	cerebellum	SCAN
rs4933211	FLJ37201	cis	cerebellum	SCAN
rs4933211	TNKS2	cis	cerebellum	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93364600-93368400	Weak transcription	Gastric	stomach
2	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:93367200-93368200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:93367200-93368200	Enhancers	Adipose Nuclei	Adipose
5	chr10:93367200-93368400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:93367200-93368400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:93367200-93368400	Enhancers	Colon Smooth Muscle	Colon
8	chr10:93367200-93369800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr10:93367200-93371600	Enhancers	Fetal Stomach	stomach
10	chr10:93367400-93368200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:93367400-93368200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr10:93367400-93368200	Enhancers	Osteobl	bone
13	chr10:93367400-93368400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:93367400-93368400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:93367400-93368400	Enhancers	Fetal Lung	lung
16	chr10:93367400-93368400	Enhancers	Right Atrium	heart
17	chr10:93367400-93368400	Enhancers	HSMM	muscle
18	chr10:93367400-93368600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:93367400-93368600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:93367400-93368600	Enhancers	Fetal Kidney	kidney
21	chr10:93367400-93368600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr10:93367400-93368800	Enhancers	Aorta	Aorta
23	chr10:93367400-93368800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr10:93367400-93368800	Enhancers	Placenta	Placenta
25	chr10:93367400-93368800	Enhancers	Left Ventricle	heart
26	chr10:93367400-93368800	Enhancers	Small Intestine	intestine
27	chr10:93367400-93369200	Enhancers	Brain Substantia Nigra	brain
28	chr10:93367400-93369200	Enhancers	Pancreas	Pancrea
29	chr10:93367400-93369200	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr10:93367400-93369400	Enhancers	Fetal Intestine Small	intestine
31	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr10:93367400-93369400	Flanking Active TSS	Hela-S3	cervix
34	chr10:93367400-93369800	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr10:93367400-93369800	Enhancers	Ovary	ovary
36	chr10:93367400-93371400	Enhancers	Psoas Muscle	Psoas
37	chr10:93367400-93371600	Enhancers	Fetal Muscle Leg	muscle
38	chr10:93367400-93372000	Enhancers	NHLF	lung
39	chr10:93367400-93373600	Enhancers	NHDF-Ad	bronchial
40	chr10:93367600-93368200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr10:93367600-93368400	Enhancers	Esophagus	oesophagus
42	chr10:93367600-93368400	Enhancers	Fetal Brain Female	brain
43	chr10:93367600-93368400	Enhancers	NHEK	skin
44	chr10:93367600-93368600	Enhancers	Right Ventricle	heart
45	chr10:93367600-93368800	Enhancers	Fetal Muscle Trunk	muscle
46	chr10:93367600-93369000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:93367600-93369000	Enhancers	HUVEC	blood vessel
48	chr10:93367600-93369200	Enhancers	Colonic Mucosa	Colon
49	chr10:93367600-93369400	Enhancers	Brain Anterior Caudate	brain
50	chr10:93367600-93369400	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links