Variant report

Variant	rs10748561
Chromosome Location	chr10:93367749-93367750
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
2	chr10:93363309..93366261-chr10:93366366..93368768,3	K562	blood:
3	chr10:93168617..93171307-chr10:93366868..93369856,2	K562	blood:
4	chr10:93366313..93369162-chr10:93391370..93392912,2	MCF-7	breast:
5	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
6	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
7	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10748562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595816	0.92[ASN][1000 genomes]
rs1857059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421615	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4313485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4329593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933211	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867863	0.92[ASN][1000 genomes]
rs7067622	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724585	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748400	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748402	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902087	0.92[ASN][1000 genomes]
rs7911809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93357600-93368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:93364000-93367800	Weak transcription	Stomach Mucosa	stomach
3	chr10:93364600-93368400	Weak transcription	Gastric	stomach
4	chr10:93365400-93367800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:93367200-93367800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:93367200-93367800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:93367200-93368000	Enhancers	Rectal Smooth Muscle	rectum
9	chr10:93367200-93368200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr10:93367200-93368200	Enhancers	Adipose Nuclei	Adipose
11	chr10:93367200-93368400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:93367200-93368400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:93367200-93368400	Enhancers	Colon Smooth Muscle	Colon
14	chr10:93367200-93369800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:93367200-93371600	Enhancers	Fetal Stomach	stomach
16	chr10:93367400-93367800	Enhancers	HepG2	liver
17	chr10:93367400-93368000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:93367400-93368200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:93367400-93368200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr10:93367400-93368200	Enhancers	Osteobl	bone
21	chr10:93367400-93368400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:93367400-93368400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr10:93367400-93368400	Enhancers	Fetal Lung	lung
24	chr10:93367400-93368400	Enhancers	Right Atrium	heart
25	chr10:93367400-93368400	Enhancers	HSMM	muscle
26	chr10:93367400-93368600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr10:93367400-93368600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:93367400-93368600	Enhancers	Fetal Kidney	kidney
29	chr10:93367400-93368600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr10:93367400-93368800	Enhancers	Aorta	Aorta
31	chr10:93367400-93368800	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr10:93367400-93368800	Enhancers	Placenta	Placenta
33	chr10:93367400-93368800	Enhancers	Left Ventricle	heart
34	chr10:93367400-93368800	Enhancers	Small Intestine	intestine
35	chr10:93367400-93369200	Enhancers	Brain Substantia Nigra	brain
36	chr10:93367400-93369200	Enhancers	Pancreas	Pancrea
37	chr10:93367400-93369200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr10:93367400-93369400	Enhancers	Fetal Intestine Small	intestine
39	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
40	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr10:93367400-93369400	Flanking Active TSS	Hela-S3	cervix
42	chr10:93367400-93369800	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr10:93367400-93369800	Enhancers	Ovary	ovary
44	chr10:93367400-93371400	Enhancers	Psoas Muscle	Psoas
45	chr10:93367400-93371600	Enhancers	Fetal Muscle Leg	muscle
46	chr10:93367400-93372000	Enhancers	NHLF	lung
47	chr10:93367400-93373600	Enhancers	NHDF-Ad	bronchial
48	chr10:93367600-93367800	Flanking Active TSS	Fetal Brain Male	brain
49	chr10:93367600-93367800	Enhancers	K562	blood
50	chr10:93367600-93368000	Enhancers	Brain Angular Gyrus	brain

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