Variant report

Variant	rs4331000
Chromosome Location	chr10:93366466-93366467
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93346562..93349330-chr10:93365146..93366773,2	K562	blood:
2	chr10:93363309..93366261-chr10:93366366..93368768,3	K562	blood:
3	chr10:93366313..93369162-chr10:93391370..93392912,2	MCF-7	breast:
4	chr10:93365300..93367131-chr10:93369836..93371716,2	K562	blood:
5	chr10:93357670..93360937-chr10:93364618..93367584,3	K562	blood:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10748561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595816	0.92[ASN][1000 genomes]
rs1857059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421615	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4313485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4329593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933211	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867863	0.92[ASN][1000 genomes]
rs7067622	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724585	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748400	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748402	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902087	0.92[ASN][1000 genomes]
rs7911809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93357600-93368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:93357800-93367600	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:93358400-93367600	Weak transcription	Brain Anterior Caudate	brain
4	chr10:93361000-93367400	Weak transcription	Psoas Muscle	Psoas
5	chr10:93362800-93367600	Weak transcription	Right Ventricle	heart
6	chr10:93363800-93367400	Weak transcription	Pancreas	Pancrea
7	chr10:93363800-93367600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:93364000-93367400	Weak transcription	Aorta	Aorta
9	chr10:93364000-93367400	Weak transcription	Right Atrium	heart
10	chr10:93364000-93367800	Weak transcription	Stomach Mucosa	stomach
11	chr10:93364200-93367400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr10:93364400-93367400	Weak transcription	Ovary	ovary
13	chr10:93364600-93368400	Weak transcription	Gastric	stomach
14	chr10:93364800-93367400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:93364800-93367400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:93364800-93367400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:93365200-93367600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr10:93365400-93367200	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:93365400-93367200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr10:93365400-93367400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:93365400-93367400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:93365400-93367400	Weak transcription	Fetal Kidney	kidney
23	chr10:93365400-93367400	Weak transcription	Fetal Lung	lung
24	chr10:93365400-93367800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:93365600-93367200	Weak transcription	Fetal Stomach	stomach
26	chr10:93365600-93367400	Weak transcription	HSMM	muscle
27	chr10:93365600-93367400	Weak transcription	NHLF	lung
28	chr10:93365600-93367400	Weak transcription	Osteobl	bone
29	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:93365800-93367200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:93366200-93366800	Weak transcription	A549	lung
32	chr10:93366200-93367200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:93366200-93367200	Weak transcription	HSMMtube	muscle
34	chr10:93366200-93367400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr10:93366200-93367400	Weak transcription	NHDF-Ad	bronchial
36	chr10:93366400-93367200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:93366400-93367200	Weak transcription	Fetal Heart	heart
38	chr10:93366400-93367200	Weak transcription	Hela-S3	cervix

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