Variant report

Variant	rs2421615
Chromosome Location	chr10:93360626-93360627
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93357183..93358744-chr10:93360434..93363194,2	MCF-7	breast:
2	chr10:93350580..93353004-chr10:93359204..93360922,2	K562	blood:
3	chr10:93357670..93360937-chr10:93364618..93367584,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10748561	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748562	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595816	0.92[ASN][1000 genomes]
rs1857059	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2010902	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421617	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313484	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4313485	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4329593	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331000	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514319	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933211	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867863	0.92[ASN][1000 genomes]
rs7067622	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083815	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101314	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724585	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs724586	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748400	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748402	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902087	0.92[ASN][1000 genomes]
rs7911809	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93354600-93364800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:93355800-93361000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr10:93357600-93363400	Weak transcription	Lung	lung
4	chr10:93357600-93368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:93357800-93367600	Weak transcription	Brain Hippocampus Middle	brain
6	chr10:93358200-93363200	Weak transcription	Ovary	ovary
7	chr10:93358400-93361800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:93358400-93362600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:93358400-93362600	Weak transcription	Stomach Mucosa	stomach
10	chr10:93358400-93363400	Weak transcription	Esophagus	oesophagus
11	chr10:93358400-93363400	Weak transcription	Right Atrium	heart
12	chr10:93358400-93363800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:93358400-93366400	Enhancers	Hela-S3	cervix
14	chr10:93358400-93367600	Weak transcription	Brain Anterior Caudate	brain
15	chr10:93358600-93362400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:93358600-93362400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:93358600-93362400	Weak transcription	Left Ventricle	heart
18	chr10:93358600-93362400	Weak transcription	Right Ventricle	heart
19	chr10:93358600-93362400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr10:93358600-93362800	Weak transcription	Fetal Kidney	kidney
21	chr10:93358600-93364000	Weak transcription	Colon Smooth Muscle	Colon
22	chr10:93358800-93361800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:93358800-93361800	Weak transcription	HSMM	muscle
24	chr10:93358800-93362000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:93358800-93362000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:93358800-93362000	Weak transcription	HSMMtube	muscle
27	chr10:93358800-93362200	Weak transcription	Fetal Lung	lung
28	chr10:93358800-93362400	Weak transcription	Fetal Stomach	stomach
29	chr10:93358800-93362800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:93358800-93363000	Weak transcription	Aorta	Aorta
31	chr10:93358800-93363200	Weak transcription	HUVEC	blood vessel
32	chr10:93358800-93363200	Weak transcription	NHLF	lung
33	chr10:93358800-93363400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:93358800-93363400	Weak transcription	Osteobl	bone
35	chr10:93358800-93363600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:93358800-93363600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:93359000-93363200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:93359200-93361800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:93359200-93363000	Weak transcription	NHEK	skin
40	chr10:93359400-93362200	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr10:93359400-93362200	Weak transcription	NHDF-Ad	bronchial
42	chr10:93359400-93363400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:93359400-93363800	Weak transcription	HMEC	breast
44	chr10:93359800-93361000	Enhancers	Psoas Muscle	Psoas
45	chr10:93360000-93362200	Weak transcription	A549	lung
46	chr10:93360200-93361200	Weak transcription	Fetal Heart	heart
47	chr10:93360400-93360800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr10:93360400-93363400	Weak transcription	Pancreas	Pancrea
49	chr10:93360600-93361800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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