Variant report

Variant	rs7089286
Chromosome Location	chr10:93354846-93354847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93353150..93355778-chr10:93356212..93359175,2	K562	blood:
2	chr10:93347896..93349521-chr10:93352949..93355020,2	K562	blood:
3	chr10:93354410..93356378-chr10:93360758..93362837,2	K562	blood:
4	chr10:93349706..93352465-chr10:93354064..93358504,5	K562	blood:
5	chr10:93348105..93349991-chr10:93353710..93355230,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10509628	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509630	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10509633	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11591635	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11594086	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11595816	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11597380	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11597974	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571806	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418155	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418157	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1418159	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1557116	0.86[ASN][1000 genomes]
rs17106808	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106816	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106843	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17106882	0.83[EUR][1000 genomes]
rs3781228	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4590778	0.86[ASN][1000 genomes]
rs55954710	0.90[ASN][1000 genomes]
rs56122986	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57867863	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58198809	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59139525	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60214919	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60894624	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7084791	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7089163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73318277	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73318294	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73320142	0.81[ASN][1000 genomes]
rs73320144	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73322039	0.81[EUR][1000 genomes]
rs73322041	0.83[EUR][1000 genomes]
rs74149269	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149270	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149272	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs748401	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7893432	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7894061	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7902087	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7919341	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
3	chr10:93348200-93358800	Enhancers	Fetal Intestine Small	intestine
4	chr10:93349000-93356200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:93349400-93356200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:93351000-93356400	Weak transcription	HMEC	breast
7	chr10:93351200-93356400	Weak transcription	Brain Substantia Nigra	brain
8	chr10:93351400-93357200	Weak transcription	Lung	lung
9	chr10:93351600-93355600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:93351600-93356000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:93351600-93356200	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:93351600-93356400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:93351600-93356400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:93351600-93356600	Weak transcription	Adipose Nuclei	Adipose
15	chr10:93351600-93356600	Weak transcription	Gastric	stomach
16	chr10:93351600-93356600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:93351800-93355000	Enhancers	Colon Smooth Muscle	Colon
18	chr10:93351800-93356600	Enhancers	A549	lung
19	chr10:93351800-93356800	Weak transcription	Fetal Brain Female	brain
20	chr10:93351800-93357200	Enhancers	Hela-S3	cervix
21	chr10:93351800-93359200	Enhancers	Fetal Intestine Large	intestine
22	chr10:93352200-93355800	Weak transcription	HUVEC	blood vessel
23	chr10:93352200-93356200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:93352200-93356200	Weak transcription	Osteobl	bone
25	chr10:93352400-93355000	Enhancers	Stomach Smooth Muscle	stomach
26	chr10:93352400-93356400	Weak transcription	Brain Anterior Caudate	brain
27	chr10:93352400-93356800	Weak transcription	Fetal Brain Male	brain
28	chr10:93352400-93357200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:93352800-93355600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:93352800-93355800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:93352800-93356000	Weak transcription	HSMM	muscle
32	chr10:93353000-93356800	Weak transcription	Stomach Mucosa	stomach
33	chr10:93353000-93360200	Enhancers	Fetal Heart	heart
34	chr10:93353200-93355600	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:93353200-93355800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:93353200-93356000	Weak transcription	HSMMtube	muscle
37	chr10:93353200-93357200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr10:93353400-93355800	Weak transcription	Fetal Kidney	kidney
39	chr10:93353400-93356600	Weak transcription	Left Ventricle	heart
40	chr10:93353400-93356600	Weak transcription	Right Atrium	heart
41	chr10:93353400-93357200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr10:93353600-93355600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:93353600-93356000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:93353600-93356200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:93353600-93356400	Weak transcription	Small Intestine	intestine
46	chr10:93353600-93356600	Weak transcription	Right Ventricle	heart
47	chr10:93353600-93357200	Weak transcription	Placenta	Placenta
48	chr10:93353600-93357400	Weak transcription	Aorta	Aorta
49	chr10:93353800-93355800	Weak transcription	NHEK	skin
50	chr10:93353800-93356400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links