Variant report

Variant	rs7919341
Chromosome Location	chr10:93371837-93371838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93348429..93351278-chr10:93370659..93373317,2	K562	blood:
2	chr10:93349778..93351711-chr10:93371480..93373317,2	K562	blood:
3	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
4	chr10:93362637..93365388-chr10:93371389..93374177,2	MCF-7	breast:
5	chr10:93371223..93372891-chr10:93374209..93376452,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10509628	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10509630	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10509633	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11591635	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11594086	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11595816	0.92[EUR][1000 genomes]
rs11597380	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11597974	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11598778	0.89[EUR][1000 genomes]
rs12571806	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1418155	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1418157	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1418159	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1557116	0.94[ASN][1000 genomes]
rs17106808	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17106816	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17106843	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17106882	0.94[EUR][1000 genomes]
rs3781228	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4590778	0.94[ASN][1000 genomes]
rs55954710	0.94[ASN][1000 genomes]
rs56122986	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57754500	0.89[EUR][1000 genomes]
rs57867863	0.92[EUR][1000 genomes]
rs58198809	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59139525	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60214919	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60894624	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7084791	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7089163	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7089286	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73318257	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73318277	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73318294	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73320142	0.90[ASN][1000 genomes]
rs73320144	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73322039	0.92[EUR][1000 genomes]
rs73322041	0.94[EUR][1000 genomes]
rs74149269	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149270	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74149272	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs748401	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7893432	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7894061	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7902087	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93367400-93372000	Enhancers	NHLF	lung
3	chr10:93367400-93373600	Enhancers	NHDF-Ad	bronchial
4	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:93368800-93372800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr10:93368800-93373000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:93368800-93373200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:93368800-93373600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:93368800-93373800	Weak transcription	Small Intestine	intestine
10	chr10:93369000-93372000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:93369000-93372800	Weak transcription	HUVEC	blood vessel
12	chr10:93369000-93373200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:93369000-93387600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:93369200-93372000	Enhancers	Colon Smooth Muscle	Colon
15	chr10:93369200-93373200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:93369200-93373600	Weak transcription	Colonic Mucosa	Colon
17	chr10:93369400-93372800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:93369400-93373000	Enhancers	Hela-S3	cervix
19	chr10:93369400-93373600	Weak transcription	Adipose Nuclei	Adipose
20	chr10:93369400-93378600	Weak transcription	Fetal Intestine Small	intestine
21	chr10:93369400-93379200	Weak transcription	Liver	Liver
22	chr10:93369600-93373000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:93369600-93387800	Weak transcription	Fetal Brain Male	brain
24	chr10:93369800-93373000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:93369800-93373400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:93370400-93374200	Enhancers	Fetal Heart	heart
27	chr10:93371000-93372600	Weak transcription	NH-A	brain
28	chr10:93371000-93372800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:93371000-93373000	Weak transcription	HMEC	breast
30	chr10:93371000-93373200	Weak transcription	NHEK	skin
31	chr10:93371000-93373400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr10:93371200-93372600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:93371200-93376800	Weak transcription	Spleen	Spleen
34	chr10:93371400-93372400	Weak transcription	HSMM	muscle
35	chr10:93371400-93372600	Weak transcription	HSMMtube	muscle
36	chr10:93371400-93372600	Weak transcription	Osteobl	bone
37	chr10:93371400-93373000	Weak transcription	Left Ventricle	heart
38	chr10:93371400-93373000	Weak transcription	A549	lung
39	chr10:93371400-93373200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:93371400-93373200	Weak transcription	Aorta	Aorta
41	chr10:93371400-93373800	Weak transcription	Psoas Muscle	Psoas
42	chr10:93371400-93374400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr10:93371400-93377000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:93371400-93381400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:93371400-93383600	Weak transcription	Ovary	ovary
46	chr10:93371400-93383600	Weak transcription	Right Ventricle	heart
47	chr10:93371400-93386800	Weak transcription	Pancreas	Pancrea
48	chr10:93371600-93372800	Weak transcription	Fetal Stomach	stomach
49	chr10:93371600-93373000	Weak transcription	Fetal Muscle Leg	muscle
50	chr10:93371600-93373000	Weak transcription	Stomach Mucosa	stomach

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