Variant report

Variant	rs1418157
Chromosome Location	chr10:93368439-93368440
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
2	chr10:93363309..93366261-chr10:93366366..93368768,3	K562	blood:
3	chr10:93368141..93371067-chr10:93374418..93377017,2	MCF-7	breast:
4	chr10:93168617..93171307-chr10:93366868..93369856,2	K562	blood:
5	chr10:93368169..93371090-chr10:93379078..93381168,3	K562	blood:
6	chr10:93366313..93369162-chr10:93391370..93392912,2	MCF-7	breast:
7	chr10:93367612..93370294-chr10:93370474..93375742,6	K562	blood:
8	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
9	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:
10	chr10:93368169..93371090-chr10:93379550..93381168,2	K562	blood:
11	chr10:93368025..93369544-chr10:93384747..93386329,2	K562	blood:
12	chr10:93368114..93370333-chr10:93371852..93374475,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10509628	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10509630	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509633	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11591635	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594086	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595816	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11597380	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11597974	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598778	0.84[EUR][1000 genomes]
rs12571806	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418155	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418159	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557116	0.88[ASN][1000 genomes]
rs17106808	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106816	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106843	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106882	0.89[EUR][1000 genomes]
rs3781228	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4590778	0.88[ASN][1000 genomes]
rs55954710	0.92[ASN][1000 genomes]
rs56122986	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57754500	0.84[EUR][1000 genomes]
rs57867863	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58198809	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59139525	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60214919	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894624	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7084791	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089163	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7089286	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73318257	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318277	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318294	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73320142	0.84[ASN][1000 genomes]
rs73320144	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73322039	0.87[EUR][1000 genomes]
rs73322041	0.89[EUR][1000 genomes]
rs74149269	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74149270	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74149272	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs748401	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893432	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894061	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902087	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7919341	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:93367200-93369800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr10:93367200-93371600	Enhancers	Fetal Stomach	stomach
4	chr10:93367400-93368600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:93367400-93368600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:93367400-93368600	Enhancers	Fetal Kidney	kidney
7	chr10:93367400-93368600	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr10:93367400-93368800	Enhancers	Aorta	Aorta
9	chr10:93367400-93368800	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr10:93367400-93368800	Enhancers	Placenta	Placenta
11	chr10:93367400-93368800	Enhancers	Left Ventricle	heart
12	chr10:93367400-93368800	Enhancers	Small Intestine	intestine
13	chr10:93367400-93369200	Enhancers	Brain Substantia Nigra	brain
14	chr10:93367400-93369200	Enhancers	Pancreas	Pancrea
15	chr10:93367400-93369200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr10:93367400-93369400	Enhancers	Fetal Intestine Small	intestine
17	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr10:93367400-93369400	Flanking Active TSS	Hela-S3	cervix
20	chr10:93367400-93369800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr10:93367400-93369800	Enhancers	Ovary	ovary
22	chr10:93367400-93371400	Enhancers	Psoas Muscle	Psoas
23	chr10:93367400-93371600	Enhancers	Fetal Muscle Leg	muscle
24	chr10:93367400-93372000	Enhancers	NHLF	lung
25	chr10:93367400-93373600	Enhancers	NHDF-Ad	bronchial
26	chr10:93367600-93368600	Enhancers	Right Ventricle	heart
27	chr10:93367600-93368800	Enhancers	Fetal Muscle Trunk	muscle
28	chr10:93367600-93369000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:93367600-93369000	Enhancers	HUVEC	blood vessel
30	chr10:93367600-93369200	Enhancers	Colonic Mucosa	Colon
31	chr10:93367600-93369400	Enhancers	Brain Anterior Caudate	brain
32	chr10:93367600-93369400	Enhancers	Placenta Amnion	Placenta Amnion
33	chr10:93367600-93369400	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr10:93367600-93369600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:93367600-93371000	Enhancers	NH-A	brain
36	chr10:93367800-93369000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:93367800-93369000	Flanking Active TSS	HepG2	liver
38	chr10:93367800-93369400	Enhancers	Stomach Mucosa	stomach
39	chr10:93367800-93369400	Flanking Active TSS	K562	blood
40	chr10:93367800-93369600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:93367800-93369600	Enhancers	Fetal Brain Male	brain
42	chr10:93368000-93368600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:93368000-93368800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:93368000-93368800	Enhancers	Fetal Intestine Large	intestine
45	chr10:93368000-93369000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:93368000-93369200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:93368000-93369400	Flanking Active TSS	HSMMtube	muscle
48	chr10:93368000-93369800	Flanking Active TSS	Fetal Heart	heart
49	chr10:93368000-93371000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:93368000-93388600	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links