Variant report

Variant	rs11594086
Chromosome Location	chr10:93360538-93360539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93357183..93358744-chr10:93360434..93363194,2	MCF-7	breast:
2	chr10:93350580..93353004-chr10:93359204..93360922,2	K562	blood:
3	chr10:93357670..93360937-chr10:93364618..93367584,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10509628	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10509630	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509633	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11591635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595816	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11597380	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11597974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598778	0.83[EUR][1000 genomes]
rs12571806	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418155	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418157	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418159	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557116	0.88[ASN][1000 genomes]
rs17106808	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106816	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106843	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106882	0.87[EUR][1000 genomes]
rs3781228	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4590778	0.88[ASN][1000 genomes]
rs55954710	0.92[ASN][1000 genomes]
rs56122986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57754500	0.83[EUR][1000 genomes]
rs57867863	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58198809	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59139525	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60214919	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894624	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7084791	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089163	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7089286	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73318257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318277	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318294	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73320142	0.84[ASN][1000 genomes]
rs73320144	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73322039	0.86[EUR][1000 genomes]
rs73322041	0.87[EUR][1000 genomes]
rs74149269	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74149270	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74149272	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs748401	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893432	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894061	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902087	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7919341	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93354600-93364800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr10:93355800-93361000	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr10:93356000-93360600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:93357600-93363400	Weak transcription	Lung	lung
5	chr10:93357600-93368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:93357800-93367600	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:93358200-93363200	Weak transcription	Ovary	ovary
8	chr10:93358400-93361800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:93358400-93362600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:93358400-93362600	Weak transcription	Stomach Mucosa	stomach
11	chr10:93358400-93363400	Weak transcription	Esophagus	oesophagus
12	chr10:93358400-93363400	Weak transcription	Right Atrium	heart
13	chr10:93358400-93363800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:93358400-93366400	Enhancers	Hela-S3	cervix
15	chr10:93358400-93367600	Weak transcription	Brain Anterior Caudate	brain
16	chr10:93358600-93362400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:93358600-93362400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr10:93358600-93362400	Weak transcription	Left Ventricle	heart
19	chr10:93358600-93362400	Weak transcription	Right Ventricle	heart
20	chr10:93358600-93362400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:93358600-93362800	Weak transcription	Fetal Kidney	kidney
22	chr10:93358600-93364000	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:93358800-93361800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:93358800-93361800	Weak transcription	HSMM	muscle
25	chr10:93358800-93362000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:93358800-93362000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:93358800-93362000	Weak transcription	HSMMtube	muscle
28	chr10:93358800-93362200	Weak transcription	Fetal Lung	lung
29	chr10:93358800-93362400	Weak transcription	Fetal Stomach	stomach
30	chr10:93358800-93362800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr10:93358800-93363000	Weak transcription	Aorta	Aorta
32	chr10:93358800-93363200	Weak transcription	HUVEC	blood vessel
33	chr10:93358800-93363200	Weak transcription	NHLF	lung
34	chr10:93358800-93363400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:93358800-93363400	Weak transcription	Osteobl	bone
36	chr10:93358800-93363600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:93358800-93363600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:93359000-93363200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:93359200-93361800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:93359200-93363000	Weak transcription	NHEK	skin
41	chr10:93359400-93362200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr10:93359400-93362200	Weak transcription	NHDF-Ad	bronchial
43	chr10:93359400-93363400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:93359400-93363800	Weak transcription	HMEC	breast
45	chr10:93359800-93361000	Enhancers	Psoas Muscle	Psoas
46	chr10:93360000-93362200	Weak transcription	A549	lung
47	chr10:93360200-93361200	Weak transcription	Fetal Heart	heart
48	chr10:93360400-93360800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:93360400-93363400	Weak transcription	Pancreas	Pancrea

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