Variant report

Variant	rs10509630
Chromosome Location	chr10:93356649-93356650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93353150..93355778-chr10:93356212..93359175,2	K562	blood:
2	chr10:93355565..93358601-chr10:93391118..93395265,4	MCF-7	breast:
3	chr10:93349706..93352465-chr10:93354064..93358504,5	K562	blood:
4	chr10:93168205..93170894-chr10:93355130..93357801,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction
ENSG00000119938	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509628	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10509633	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10509635	0.81[CEU][hapmap]
rs11591635	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592379	0.81[CEU][hapmap]
rs11592407	0.89[CEU][hapmap]
rs11594086	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594359	0.81[CEU][hapmap]
rs11595816	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11597380	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11597974	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571806	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418155	1.00[CEU][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418157	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418159	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557116	0.88[ASN][1000 genomes]
rs17106808	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106816	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106882	0.84[EUR][1000 genomes]
rs17107004	0.81[CEU][hapmap]
rs2000139	0.81[CEU][hapmap]
rs3781228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4590778	0.88[ASN][1000 genomes]
rs55954710	0.92[ASN][1000 genomes]
rs56122986	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57867863	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58198809	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59139525	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60214919	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894624	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7072687	0.89[CEU][hapmap]
rs7084791	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089163	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7089286	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73318257	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318277	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318294	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73320142	0.84[ASN][1000 genomes]
rs73320144	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73322039	0.82[EUR][1000 genomes]
rs73322041	0.84[EUR][1000 genomes]
rs74149269	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74149270	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74149272	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs748401	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893432	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894061	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902087	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7919341	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
3	chr10:93348200-93358800	Enhancers	Fetal Intestine Small	intestine
4	chr10:93351400-93357200	Weak transcription	Lung	lung
5	chr10:93351800-93356800	Weak transcription	Fetal Brain Female	brain
6	chr10:93351800-93357200	Enhancers	Hela-S3	cervix
7	chr10:93351800-93359200	Enhancers	Fetal Intestine Large	intestine
8	chr10:93352400-93356800	Weak transcription	Fetal Brain Male	brain
9	chr10:93352400-93357200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:93353000-93356800	Weak transcription	Stomach Mucosa	stomach
11	chr10:93353000-93360200	Enhancers	Fetal Heart	heart
12	chr10:93353200-93357200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:93353400-93357200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:93353600-93357200	Weak transcription	Placenta	Placenta
15	chr10:93353600-93357400	Weak transcription	Aorta	Aorta
16	chr10:93354400-93356800	Weak transcription	Pancreas	Pancrea
17	chr10:93354600-93356800	Weak transcription	Psoas Muscle	Psoas
18	chr10:93354600-93357000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:93354600-93357200	Weak transcription	Esophagus	oesophagus
20	chr10:93354600-93364800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:93355600-93356800	Enhancers	Fetal Lung	lung
22	chr10:93355600-93358600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr10:93355600-93358600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:93355600-93359400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr10:93355800-93357200	Enhancers	Rectal Smooth Muscle	rectum
26	chr10:93355800-93358600	Enhancers	Fetal Kidney	kidney
27	chr10:93355800-93358800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:93355800-93358800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:93355800-93358800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr10:93355800-93359200	Enhancers	NHEK	skin
31	chr10:93355800-93359400	Enhancers	NHDF-Ad	bronchial
32	chr10:93355800-93361000	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr10:93356000-93357000	Enhancers	HSMMtube	muscle
34	chr10:93356000-93357200	Enhancers	Duodenum Mucosa	Duodenum
35	chr10:93356000-93358400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:93356000-93358600	Enhancers	Colon Smooth Muscle	Colon
37	chr10:93356000-93358800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr10:93356000-93358800	Enhancers	HSMM	muscle
39	chr10:93356000-93359200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:93356000-93360600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:93356200-93357200	Enhancers	Brain Hippocampus Middle	brain
42	chr10:93356200-93357200	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr10:93356200-93357800	Enhancers	Brain Germinal Matrix	brain
44	chr10:93356200-93358400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:93356200-93358400	Enhancers	Placenta Amnion	Placenta Amnion
46	chr10:93356200-93358600	Enhancers	Stomach Smooth Muscle	stomach
47	chr10:93356200-93358800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr10:93356200-93358800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:93356200-93358800	Enhancers	NHLF	lung
50	chr10:93356200-93358800	Enhancers	Osteobl	bone

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