Variant report

Variant	rs11592407
Chromosome Location	chr10:93432382-93432383
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr10:93431822-93432654	HUVEC	blood vessel:	n/a	chr10:93432217-93432227 chr10:93432200-93432214
2	FOSL2	chr10:93431881-93432483	SK-N-SH	brain:	n/a	chr10:93432161-93432173 chr10:93432349-93432363
3	GATA3	chr10:93431580-93432644	SK-N-SH	brain:	n/a	chr10:93432217-93432227
4	PBX3	chr10:93431703-93432546	SK-N-SH	brain:	n/a	n/a
5	EP300	chr10:93431928-93432386	SK-N-SH_RA	brain:	n/a	n/a
6	YY1	chr10:93431886-93432487	SK-N-SH_RA	brain:	n/a	n/a
7	CHD2	chr10:93432026-93432383	Hela-S3	cervix:	n/a	n/a
8	GATA3	chr10:93432016-93432396	SH-SY5Y	brain:	n/a	chr10:93432217-93432227
9	BHLHE40	chr10:93431952-93432425	K562	blood:	n/a	n/a
10	SIN3AK20	chr10:93431016-93432569	MCF-7	breast:	n/a	n/a
11	GATA3	chr10:93431976-93432386	MCF-7	breast:	n/a	chr10:93432217-93432227
12	POLR2A	chr10:93432201-93432435	K562	blood:	n/a	n/a
13	GATA3	chr10:93431140-93432484	MCF-7	breast:	n/a	chr10:93432217-93432227
14	MAX	chr10:93432040-93432389	Hela-S3	cervix:	n/a	n/a
15	SIN3AK20	chr10:93431906-93432452	SK-N-SH	brain:	n/a	n/a
16	EP300	chr10:93432038-93432403	SK-N-SH_RA	brain:	n/a	n/a
17	GATA2	chr10:93432001-93432410	SH-SY5Y	brain:	n/a	chr10:93432217-93432227 chr10:93432200-93432214
18	ELF1	chr10:93431782-93432517	MCF-7	breast:	n/a	chr10:93432213-93432226
19	YY1	chr10:93431733-93432473	ECC-1	luminal epithelium:	n/a	n/a
20	KAP1	chr10:93431914-93432481	U2OS	brain:	n/a	n/a
21	GATA3	chr10:93431980-93432390	T-47D	breast:	n/a	chr10:93432217-93432227
22	JUN	chr10:93431691-93432799	K562	blood:	n/a	chr10:93432161-93432173 chr10:93432349-93432363
23	TEAD4	chr10:93431890-93432430	K562	blood:	n/a	n/a
24	ELF1	chr10:93431986-93432433	MCF-7	breast:	n/a	chr10:93432213-93432226
25	TAF1	chr10:93431952-93432437	PFSK-1	brain:	n/a	n/a
26	MAX	chr10:93431772-93432416	SK-N-SH	brain:	n/a	n/a
27	TAF1	chr10:93431920-93432420	SK-N-SH	brain:	n/a	n/a
28	NFIC	chr10:93431673-93432524	SK-N-SH	brain:	n/a	n/a
29	MYC	chr10:93432093-93432501	K562	blood:	n/a	n/a
30	TEAD4	chr10:93431899-93432508	SK-N-SH	brain:	n/a	n/a
31	ELF1	chr10:93431850-93432536	SK-N-SH	brain:	n/a	chr10:93432213-93432226
32	POLR2A	chr10:93431845-93432486	SK-N-SH	brain:	n/a	n/a
33	JUND	chr10:93431975-93432383	K562	blood:	n/a	chr10:93432161-93432173 chr10:93432349-93432363
34	YY1	chr10:93431718-93432434	ECC-1	luminal epithelium:	n/a	n/a
35	GATA1	chr10:93431812-93432970	K562	blood:	n/a	chr10:93432217-93432227
36	GATA3	chr10:93431809-93432562	MCF-7	breast:	n/a	chr10:93432217-93432227
37	POLR2A	chr10:93431896-93432484	PFSK-1	brain:	n/a	n/a
38	YY1	chr10:93431766-93432512	SK-N-SH	brain:	n/a	n/a
39	TCF12	chr10:93431643-93432547	SK-N-SH	brain:	n/a	n/a
40	GABPA	chr10:93431936-93432557	SK-N-SH	brain:	n/a	n/a
41	PBX3	chr10:93431687-93432455	SK-N-SH	brain:	n/a	n/a
42	TCF12	chr10:93431608-93432661	SK-N-SH	brain:	n/a	n/a
43	RCOR1	chr10:93431730-93432421	K562	blood:	n/a	n/a
44	POLR2A	chr10:93432004-93432403	MCF-7	breast:	n/a	n/a
45	SETDB1	chr10:93431856-93432431	U2OS	brain:	n/a	n/a
46	JUND	chr10:93431792-93432494	SK-N-SH	brain:	n/a	chr10:93432161-93432173 chr10:93432349-93432363
47	YY1	chr10:93431851-93432493	SK-N-SH_RA	brain:	n/a	n/a
48	TEAD4	chr10:93431763-93432439	ECC-1	luminal epithelium:	n/a	n/a
49	GATA3	chr10:93431660-93432606	SK-N-SH	brain:	n/a	chr10:93432217-93432227
50	ELF1	chr10:93432061-93432389	K562	blood:	n/a	chr10:93432213-93432226

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93431074..93433600-chr10:93435217..93437331,2	MCF-7	breast:
2	chr10:93428056..93430246-chr10:93430391..93432462,3	MCF-7	breast:

Variant related genes	Relation type
GAPDHP28	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10509630	0.89[CEU][hapmap]
rs10509633	0.89[CEU][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10509635	0.89[CEU][hapmap]
rs11186647	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11592379	0.89[CEU][hapmap]
rs11594359	0.89[CEU][hapmap]
rs11597380	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11598220	0.88[CEU][hapmap]
rs11598778	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11599407	0.88[CEU][hapmap]
rs1418155	0.89[CEU][hapmap]
rs17106843	0.89[CEU][hapmap]
rs17106882	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17107004	0.89[CEU][hapmap]
rs17107019	0.85[CEU][hapmap]
rs2000139	0.89[CEU][hapmap]
rs2275646	0.88[CEU][hapmap]
rs2421698	0.89[CEU][hapmap]
rs3781228	0.88[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4551673	0.89[ASN][1000 genomes]
rs4933218	0.93[ASN][1000 genomes]
rs57754500	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7072165	0.88[CEU][hapmap]
rs7072687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076515	0.86[ASN][1000 genomes]
rs7076618	0.88[CEU][hapmap]
rs7086218	0.86[ASN][1000 genomes]
rs7091015	0.88[CEU][hapmap]
rs73320144	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73322039	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73322041	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73322085	0.86[ASN][1000 genomes]
rs73323903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73323929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894188	0.82[CEU][hapmap]
rs7895548	0.89[CEU][hapmap]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427000-93443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:93427600-93448800	Weak transcription	Liver	Liver
4	chr10:93430800-93432400	Enhancers	Fetal Heart	heart
5	chr10:93430800-93432400	Enhancers	Left Ventricle	heart
6	chr10:93431200-93432600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:93431400-93432400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:93431400-93432400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:93431400-93432400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr10:93431400-93432400	Enhancers	Psoas Muscle	Psoas
11	chr10:93431400-93432600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:93431400-93433200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:93431600-93432400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:93431600-93432400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:93431600-93432400	Enhancers	Fetal Muscle Trunk	muscle
16	chr10:93431600-93432400	Enhancers	Right Atrium	heart
17	chr10:93431600-93432600	Enhancers	Dnd41	blood
18	chr10:93431600-93432800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:93431600-93432800	Enhancers	HUVEC	blood vessel
20	chr10:93431600-93433000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:93431600-93433200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:93431800-93432400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:93431800-93432400	Enhancers	H9 Cell Line	embryonic stem cell
24	chr10:93431800-93432400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:93431800-93432400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:93431800-93432400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:93431800-93432400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:93431800-93432400	Enhancers	Esophagus	oesophagus
29	chr10:93431800-93432400	Enhancers	Fetal Muscle Leg	muscle
30	chr10:93431800-93432400	Enhancers	Placenta	Placenta
31	chr10:93431800-93432400	Enhancers	Gastric	stomach
32	chr10:93431800-93432400	Enhancers	Lung	lung
33	chr10:93431800-93432400	Flanking Active TSS	Hela-S3	cervix
34	chr10:93431800-93432400	Enhancers	HMEC	breast
35	chr10:93431800-93432400	Flanking Active TSS	HSMM	muscle
36	chr10:93431800-93432600	Enhancers	NHLF	lung
37	chr10:93431800-93432800	Enhancers	NHDF-Ad	bronchial
38	chr10:93432000-93432400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:93432000-93432400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:93432000-93432400	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr10:93432000-93432400	Enhancers	Stomach Mucosa	stomach
42	chr10:93432000-93432400	Active TSS	HSMMtube	muscle
43	chr10:93432000-93432400	Flanking Active TSS	K562	blood
44	chr10:93432000-93432400	Enhancers	Osteobl	bone
45	chr10:93432200-93432400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:93432200-93432400	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:93432200-93432400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr10:93432200-93432800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr10:93432200-93432800	Enhancers	NHEK	skin

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