Variant report

Variant	rs10509633
Chromosome Location	chr10:93395788-93395789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:93395726-93396128	SK-N-MC	brain:	n/a	n/a
2	CTCF	chr10:93394775-93395939	A549	lung:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349
3	SMC3	chr10:93395015-93395889	Hela-S3	cervix:	n/a	chr10:93395336-93395346 chr10:93395336-93395350
4	CHD1	chr10:93394702-93396067	IMR90	lung:	n/a	n/a
5	CTCF	chr10:93395680-93395830	HCM	heart:	n/a	n/a
6	SMC3	chr10:93394731-93396036	SK-N-SH	brain:	n/a	chr10:93395336-93395346 chr10:93395336-93395350
7	CTCF	chr10:93395680-93395830	BE2_C	brain:	n/a	n/a
8	RAD21	chr10:93394629-93396033	SK-N-SH	brain:	n/a	chr10:93395335-93395348 chr10:93395336-93395346 chr10:93395332-93395351
9	MAFK	chr10:93395785-93396116	IMR90	lung:	n/a	n/a
10	CTCF	chr10:93395740-93395890	AoAF	blood vessel:	n/a	n/a
11	CTCF	chr10:93394970-93396258	SK-N-SH	brain:	n/a	chr10:93395337-93395347 chr10:93395329-93395350 chr10:93395334-93395352 chr10:93395336-93395349

No.	Distal block	Cell Line	Cell type
1	chr10:93057753..93058270-chr10:93394920..93395806,2	MCF-7	breast:
2	chr10:93387435..93390652-chr10:93392972..93396624,3	K562	blood:
3	chr10:93168171..93171020-chr10:93393075..93396525,3	K562	blood:
4	chr10:93311259..93312202-chr10:93394865..93395816,4	K562	blood:
5	chr10:93311257..93312872-chr10:93394985..93396104,5	MCF-7	breast:
6	chr10:93311362..93313128-chr10:93394763..93396863,21	MCF-7	breast:
7	chr10:93343830..93345636-chr10:93394100..93396852,2	K562	blood:
8	chr10:93253214..93253799-chr10:93395264..93395802,3	MCF-7	breast:
9	chr10:93386300..93388872-chr10:93393581..93396543,2	MCF-7	breast:

Variant related genes	Relation type
PPP1R3C	TF binding region
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10509628	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10509630	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10509635	0.81[CEU][hapmap]
rs11186647	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11591635	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11592379	0.81[CEU][hapmap]
rs11592407	0.89[CEU][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11594086	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11594359	0.81[CEU][hapmap]
rs11595816	0.88[EUR][1000 genomes]
rs11597380	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11597974	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11598778	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12571806	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418155	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418157	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418159	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1557116	0.88[ASN][1000 genomes]
rs17106808	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106816	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106882	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17107004	0.81[CEU][hapmap]
rs2000139	0.81[CEU][hapmap]
rs2421698	0.81[CEU][hapmap]
rs3781228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4590778	0.88[ASN][1000 genomes]
rs55954710	0.88[ASN][1000 genomes]
rs56122986	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57754500	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57867863	0.88[EUR][1000 genomes]
rs58198809	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59139525	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60214919	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60894624	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7072687	0.89[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7084791	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7089163	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7089286	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73318257	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73318277	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73318294	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73320142	0.88[ASN][1000 genomes]
rs73320144	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73322039	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73322041	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73323903	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73323929	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74149269	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74149270	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74149272	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs748401	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7893432	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7894061	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7895548	0.81[CEU][hapmap]
rs7902087	0.88[EUR][1000 genomes]
rs7919341	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93393400-93403600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93393600-93396000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:93393600-93396000	Enhancers	Hela-S3	cervix
4	chr10:93393600-93397200	Enhancers	Liver	Liver
5	chr10:93393600-93402800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:93393800-93396000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:93393800-93396000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:93394000-93396800	Enhancers	Fetal Heart	heart
9	chr10:93394200-93395800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:93394200-93396000	Enhancers	NHDF-Ad	bronchial
11	chr10:93394800-93395800	Enhancers	NH-A	brain
12	chr10:93394800-93396000	Enhancers	HepG2	liver
13	chr10:93394800-93396400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:93394800-93396800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:93395000-93395800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:93395000-93395800	Enhancers	HMEC	breast
17	chr10:93395000-93396000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:93395000-93396000	Enhancers	NHEK	skin
19	chr10:93395000-93396000	Enhancers	Osteobl	bone
20	chr10:93395000-93396400	Enhancers	NHLF	lung
21	chr10:93395200-93395800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr10:93395200-93396000	Enhancers	Fetal Stomach	stomach
23	chr10:93395200-93396000	Enhancers	A549	lung
24	chr10:93395200-93396800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:93395400-93395800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr10:93395400-93395800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:93395400-93395800	Enhancers	Brain Anterior Caudate	brain
28	chr10:93395400-93395800	Enhancers	Fetal Intestine Large	intestine
29	chr10:93395400-93395800	Enhancers	HSMM	muscle
30	chr10:93395400-93396000	Enhancers	Brain Germinal Matrix	brain
31	chr10:93395400-93396000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr10:93395400-93397200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr10:93395600-93395800	Enhancers	Aorta	Aorta
34	chr10:93395600-93396000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr10:93395600-93396000	Flanking Active TSS	Fetal Lung	lung
36	chr10:93395600-93396200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:93395600-93396400	Weak transcription	Right Atrium	heart
38	chr10:93395600-93397200	Weak transcription	Adipose Nuclei	Adipose

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