Variant report

Variant	rs7893432
Chromosome Location	chr10:93367514-93367515
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
2	chr10:93363309..93366261-chr10:93366366..93368768,3	K562	blood:
3	chr10:93168617..93171307-chr10:93366868..93369856,2	K562	blood:
4	chr10:93366313..93369162-chr10:93391370..93392912,2	MCF-7	breast:
5	chr10:93367415..93370402-chr10:93376929..93379276,2	K562	blood:
6	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:
7	chr10:93357670..93360937-chr10:93364618..93367584,3	K562	blood:

Variant related genes	Relation type
ENSG00000119938	Chromatin interaction
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10509628	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10509630	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509633	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11591635	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594086	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595816	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11597380	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11597974	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598778	0.84[EUR][1000 genomes]
rs12571806	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418155	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418157	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418159	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1557116	0.88[ASN][1000 genomes]
rs17106808	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106816	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106843	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106882	0.89[EUR][1000 genomes]
rs3781228	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4590778	0.88[ASN][1000 genomes]
rs55954710	0.92[ASN][1000 genomes]
rs56122986	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57754500	0.84[EUR][1000 genomes]
rs57867863	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58198809	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59139525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60214919	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60894624	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7084791	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089163	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7089286	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73318257	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318277	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73318294	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73320142	0.84[ASN][1000 genomes]
rs73320144	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73322039	0.87[EUR][1000 genomes]
rs73322041	0.89[EUR][1000 genomes]
rs74149269	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74149270	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74149272	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs748401	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902087	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7919341	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551914	chr10:93365015-93384073	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93357600-93368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:93357800-93367600	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:93358400-93367600	Weak transcription	Brain Anterior Caudate	brain
4	chr10:93362800-93367600	Weak transcription	Right Ventricle	heart
5	chr10:93363800-93367600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:93364000-93367800	Weak transcription	Stomach Mucosa	stomach
7	chr10:93364600-93368400	Weak transcription	Gastric	stomach
8	chr10:93365200-93367600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr10:93365400-93367800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:93365600-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:93367200-93367600	Enhancers	Stomach Smooth Muscle	stomach
12	chr10:93367200-93367800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:93367200-93367800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:93367200-93368000	Enhancers	Rectal Smooth Muscle	rectum
15	chr10:93367200-93368200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:93367200-93368200	Enhancers	Adipose Nuclei	Adipose
17	chr10:93367200-93368400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:93367200-93368400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:93367200-93368400	Enhancers	Colon Smooth Muscle	Colon
20	chr10:93367200-93369800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr10:93367200-93371600	Enhancers	Fetal Stomach	stomach
22	chr10:93367400-93367600	Active TSS	Fetal Brain Male	brain
23	chr10:93367400-93367600	Flanking Active TSS	Fetal Heart	heart
24	chr10:93367400-93367600	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr10:93367400-93367600	Flanking Active TSS	HSMMtube	muscle
26	chr10:93367400-93367600	Flanking Active TSS	K562	blood
27	chr10:93367400-93367800	Enhancers	HepG2	liver
28	chr10:93367400-93368000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:93367400-93368200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:93367400-93368200	Enhancers	Muscle Satellite Cultured Cells	--
31	chr10:93367400-93368200	Enhancers	Osteobl	bone
32	chr10:93367400-93368400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:93367400-93368400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:93367400-93368400	Enhancers	Fetal Lung	lung
35	chr10:93367400-93368400	Enhancers	Right Atrium	heart
36	chr10:93367400-93368400	Enhancers	HSMM	muscle
37	chr10:93367400-93368600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:93367400-93368600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr10:93367400-93368600	Enhancers	Fetal Kidney	kidney
40	chr10:93367400-93368600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr10:93367400-93368800	Enhancers	Aorta	Aorta
42	chr10:93367400-93368800	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr10:93367400-93368800	Enhancers	Placenta	Placenta
44	chr10:93367400-93368800	Enhancers	Left Ventricle	heart
45	chr10:93367400-93368800	Enhancers	Small Intestine	intestine
46	chr10:93367400-93369200	Enhancers	Brain Substantia Nigra	brain
47	chr10:93367400-93369200	Enhancers	Pancreas	Pancrea
48	chr10:93367400-93369200	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr10:93367400-93369400	Enhancers	Fetal Intestine Small	intestine
50	chr10:93367400-93369400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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