Variant report

Variant	rs7076618
Chromosome Location	chr10:93572387-93572388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93558698..93560238-chr10:93571745..93574194,2	MCF-7	breast:
2	chr10:93567409..93570615-chr10:93572216..93575127,3	MCF-7	breast:
3	chr10:93565439..93568069-chr10:93570903..93572534,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180581	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10509635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10509638	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10509639	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881948	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1114700	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11591329	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11591524	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11592379	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11592407	0.88[CEU][hapmap]
rs11592537	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11592805	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11592842	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11593642	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11593805	0.85[ASN][1000 genomes]
rs11594021	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11594359	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11595459	0.81[EUR][1000 genomes]
rs11595800	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11597639	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11598220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11598809	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11599407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12252794	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1417730	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417731	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1418164	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1418165	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1538833	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1539042	0.84[JPT][hapmap]
rs17106928	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17106936	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17107004	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17107010	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17107019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17107075	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107084	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107090	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107109	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17107140	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1772189	0.84[JPT][hapmap]
rs2000139	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2039973	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2039974	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2050914	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2096080	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2096081	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105296	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2185596	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2275646	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421693	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2421698	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28687467	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3758501	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3802650	0.84[JPT][hapmap]
rs3808930	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3949338	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41286940	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4144399	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4373831	0.85[ASN][1000 genomes]
rs4531370	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56111545	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57762415	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58485305	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58521911	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59065354	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59474225	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68185109	0.84[ASN][1000 genomes]
rs7067554	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067679	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7067694	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7067882	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7068311	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7068403	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7072165	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7072687	0.88[CEU][hapmap]
rs7077513	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7080889	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7083631	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7091015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs7091147	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7093641	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7094100	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7096671	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7097415	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73323962	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73323974	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73323992	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73323996	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73323998	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73324002	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73325905	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73325906	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73325913	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73325918	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73327861	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73327866	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74151714	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7894188	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7895548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906154	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7917457	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7920215	0.90[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9663682	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9665431	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9665459	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7076618	MARCH5	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559400-93572800	Weak transcription	Lung	lung
3	chr10:93559400-93573200	Weak transcription	Esophagus	oesophagus
4	chr10:93559600-93572400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:93560200-93572800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:93560200-93572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
10	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:93560400-93572600	Weak transcription	NH-A	brain
12	chr10:93560400-93572800	Weak transcription	A549	lung
13	chr10:93560400-93573200	Weak transcription	HSMMtube	muscle
14	chr10:93560400-93574400	Weak transcription	NHLF	lung
15	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr10:93560800-93573400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr10:93561000-93572400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:93561000-93572800	Weak transcription	Fetal Kidney	kidney
19	chr10:93561600-93572800	Weak transcription	Fetal Brain Male	brain
20	chr10:93562600-93572800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr10:93563000-93572400	Weak transcription	Hela-S3	cervix
22	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
23	chr10:93563600-93572800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:93563600-93578200	Weak transcription	Aorta	Aorta
25	chr10:93563800-93579400	Weak transcription	Right Atrium	heart
26	chr10:93564000-93573200	Weak transcription	Brain Germinal Matrix	brain
27	chr10:93564000-93579000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:93564600-93572400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr10:93564600-93576600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:93564800-93572800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:93565200-93572400	Weak transcription	Primary T cells from cord blood	blood
32	chr10:93565400-93572600	Weak transcription	NHDF-Ad	bronchial
33	chr10:93565400-93574200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr10:93565600-93572400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:93565600-93572400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr10:93565600-93572400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr10:93565600-93572600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:93565600-93572600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr10:93565600-93572800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:93565800-93572400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr10:93565800-93572400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:93565800-93572400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:93565800-93572400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:93565800-93572400	Weak transcription	HUVEC	blood vessel
45	chr10:93565800-93572400	Weak transcription	K562	blood
46	chr10:93565800-93572600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr10:93565800-93572600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:93565800-93572600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:93565800-93572600	Weak transcription	Brain Hippocampus Middle	brain
50	chr10:93565800-93572600	Weak transcription	Fetal Muscle Trunk	muscle

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