Variant report

Variant	rs12252794
Chromosome Location	chr10:93445256-93445257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93444232..93446401-chr10:93448282..93451081,3	K562	blood:
2	chr10:93444389..93447006-chr10:93448004..93451081,3	K562	blood:
3	chr10:93444797..93447256-chr10:93449806..93452574,3	MCF-7	breast:
4	chr10:93411652..93413648-chr10:93444195..93446402,2	MCF-7	breast:
5	chr10:93439340..93443358-chr10:93444027..93446342,3	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10509635	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10881948	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1114700	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11591329	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11591524	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11592233	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592289	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592379	0.93[EUR][1000 genomes]
rs11592537	0.87[EUR][1000 genomes]
rs11592805	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11592842	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11593642	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11594359	0.93[EUR][1000 genomes]
rs11595459	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595800	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11597639	0.85[EUR][1000 genomes]
rs11598220	0.80[EUR][1000 genomes]
rs11598809	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11599407	0.90[EUR][1000 genomes]
rs1417730	0.81[EUR][1000 genomes]
rs1418164	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1418165	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1538833	0.80[EUR][1000 genomes]
rs17106928	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106936	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17107004	0.95[EUR][1000 genomes]
rs17107010	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17107019	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17107075	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17107084	0.81[EUR][1000 genomes]
rs17107090	0.81[EUR][1000 genomes]
rs17107109	0.80[EUR][1000 genomes]
rs17107140	0.80[EUR][1000 genomes]
rs2000139	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2039973	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2039974	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2050914	0.80[EUR][1000 genomes]
rs2096080	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2096081	0.87[EUR][1000 genomes]
rs2105296	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2421693	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28687467	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3808930	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3949338	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4144399	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4531370	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56111545	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57762415	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58485305	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58521911	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59065354	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59474225	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7067554	0.81[EUR][1000 genomes]
rs7067679	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7067694	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7067882	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7068311	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7068403	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7072165	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7076618	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7077513	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7080889	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7083631	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7091147	0.93[EUR][1000 genomes]
rs7093641	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7094100	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096671	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7097415	0.93[EUR][1000 genomes]
rs73323962	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73323974	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73323992	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73323996	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73323998	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73324002	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73325905	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73325906	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73325913	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73325918	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74151714	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7894188	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7906154	0.87[EUR][1000 genomes]
rs7917457	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7920215	0.87[EUR][1000 genomes]
rs9663682	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9665431	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9665459	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427600-93448800	Weak transcription	Liver	Liver
3	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
4	chr10:93441600-93449800	Weak transcription	HSMMtube	muscle
5	chr10:93442000-93449800	Weak transcription	Fetal Brain Male	brain
6	chr10:93442400-93446400	Weak transcription	Brain Anterior Caudate	brain
7	chr10:93442400-93449800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:93443000-93445400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:93443000-93445600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:93443800-93445400	Enhancers	NHEK	skin
11	chr10:93444000-93449400	Weak transcription	HSMM	muscle
12	chr10:93444200-93449000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:93444400-93449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:93444400-93449800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:93444600-93447200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr10:93444600-93448800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:93444600-93449600	Weak transcription	Osteobl	bone
18	chr10:93444800-93445800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr10:93445000-93447600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr10:93445000-93447600	Weak transcription	HMEC	breast
21	chr10:93445000-93449400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr10:93445000-93449600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:93445000-93449600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:93445000-93449600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:93445000-93449600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:93445000-93449600	Weak transcription	NHDF-Ad	bronchial
27	chr10:93445000-93449600	Weak transcription	NHLF	lung

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